LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03203	ATGAATCCTTTATGCTGCATTGCTCCGGTTTCGATCGATCGAGATCGAGGCAACTCAGTAGTGTCCAAATCGAATACTCAGTGTCAGTTAGGGTTAGATTCGTCGATTAAAACGGTTAACTCTGCTTCCAAATCGAGTTTCTCAACTCATGACTCGTCGGTTGCAGGAGATTCGGTTAAATCATCTTCTGCTGGTGGTTTGAATCATGAAGATGATGATGATGTTGTTGTTTACGAGGCTAAAGATTCTAAGGTGTTAAACGGTGGTGTTGCTGGTAGTGTGGCTGGGATATTGTATAAATGGGTGAATTATGGTAAAGGTTGGAGGTCTAGGTGGTTTGTGTTGGAAGATGGTGTGCTTTCTTATTATAAGATTCATGGGCCTGATAAGATCTTGATGAGTCCTGCTAAGGATAGGAGTGTTAGAGTGATCGGAGACGAGTCGTCGAAGTTTGTGAAAAAGGCGAATTGGAATGTCAATCGAGGTAGTGGTAATGGAGCTACTAAGCAATGCAAGCCATTTGGTGAGATACATTTGAAGGTTTCTTCAGTTCGCTTCAGCAAGTCTGATGACAAGCGACTTTCCTTATTTACTGGGACAAAAACTCTTCACTTGAGGTGTGTGTCTAGAGAAGACAGAGCCATGTGGATTGAAGCCCTGCAGTCTGCAAAAGATCTTTTTCCTAGAGCTCTGACAAGCAGCGATCTTGCAACTCCAGAAGATATCGTAGTTTCGACAGAGAAGCTGCGATCAAGATTATCACAGGAAGGCATAAATGAAGAAATCATTAATGACTGCGAGTCTATTATGCTCTCTGAAGTCTCATATCTTCAAGGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGTTGGACACCTTAAAACAACTGGAGACGGAGAAAATAGAGTTGGAAACTACTGTAGTAGATGAAACAAAGGAACGTGAGTCATATTGCGGACAAGCGAATAGAAGGTTTAGTGATTTCTATTCTGTTATGTCGGAAGGAAGTGCTACAGACTCGGTAGTCGATAATGAAAGTCAAGATGGAGCAGATGCTGAAACAGATGATGAAGATGGAACATATTTTGATACAAACGAGACTTTATATTCAGATGCCTTAAGAAGTGCTTCCTATCGAAGTAGAGAAGGTACAGGAAATGCCAGTATATACGATAGAGATTATAGTCTCCATGATGGTTTGCATGGGTTTGAGATGGCGATCAAAGATATAAGCTATCCTTATGTCAAAAGAAGGGATAATTTACCAGAACCAAAAGAGAAGGACAAACCTGTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTGTCTTCATTGCAAAAGTGTTTTGAAGACCTGGAGTACTCAAACCTAGTCGACAGAGCATTGGAATGGGGAAAGCAGGGGAATGAATTGATGAGAATTCTAAATATTGCAGCATTTGCTGTGTCTGGCTATGCGTCCACTGAAGGTCGACAGTGTAAACCTTTCAATCCTCTGCTTGGGGAGACTTACGAAGCTGACTATCCAGATAAAGGAGTTAAATTTTTTTCGGAAAAGGTTAGTCATCATCCAATGGTTGTTGCTTGTCACTGTGAGGGAAGAGGATGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAGTTCTGGGGGCGTTCAATTCAGTTAGATCCTGTGGGCGTTCTCACCCTACAGTTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACTACTTCCATATACAATATTATACTGGGTAAAATTTATTGTGACCACTATGGTACTATGCACATCAAGGGGAGTGGAAACTACTCTTGCAAATTGAAGTTCAAAGAGCAATCTATCATAGACCGAAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTGGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTATTATGTACTTGGGGATCCAACTACAAAGCCCAAAGGTTATGATCCCATGACAGAAGCTGCATTATTGTGGGAAAAGGACAACTATGTCCCCAAGACGAGATACAACCTCTCACCCTTTGCAATTTCCTTGAATGAAATAGTGCCTGGTTTATTGGTGAAGTTGCCTCCGACTGACTCAAGGTTGAGACCAGATCAAAGACATTTGGAAAATGGGGAGTATGAATTTGCAAATGCAGAGAAACTAAGACTTGAACAGTTGCAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCCAGATGGTTTAAGAAGGATGAAGACGGTTCTTACCGATACATGGGTGGCTATTGGGAGGCAAGAGAAAAGAACAATTGGGATGGAATCCCTGATATATTTGGACAAGGTTGTGATTTGCCTTCATGTTCTGAAGAGAATGTATCCTACTGA	2448	0.4154	MNPLCCIAPVSIDRDRGNSVVSKSNTQCQLGLDSSIKTVNSASKSSFSTHDSSVAGDSVKSSSAGGLNHEDDDDVVVYEAKDSKVLNGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAKDRSVRVIGDESSKFVKKANWNVNRGSGNGATKQCKPFGEIHLKVSSVRFSKSDDKRLSLFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRALTSSDLATPEDIVVSTEKLRSRLSQEGINEEIINDCESIMLSEVSYLQGKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQANRRFSDFYSVMSEGSATDSVVDNESQDGADAETDDEDGTYFDTNETLYSDALRSASYRSREGTGNASIYDRDYSLHDGLHGFEMAIKDISYPYVKRRDNLPEPKEKDKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSNLVDRALEWGKQGNELMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGVKFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWEKDNYVPKTRYNLSPFAISLNEIVPGLLVKLPPTDSRLRPDQRHLENGEYEFANAEKLRLEQLQRQARKMQERGWQPRWFKKDEDGSYRYMGGYWEAREKNNWDGIPDIFGQGCDLPSCSEENVSY	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03203	815	CDD	PH_ORP_plant	94	229	-	-
	Trre5g03203	815	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	94	787	IPR000648	GO:0008289
	Trre5g03203	815	Coils	Coil	281	315	-	-
	Trre5g03203	815	FunFam	Oxysterol-binding protein-related protein 2A	731	801	-	-
	Trre5g03203	815	MobiDBLite	consensus disorder prediction	46	68	-	-
	Trre5g03203	815	MobiDBLite	consensus disorder prediction	338	363	-	-
	Trre5g03203	815	FunFam	oxysterol-binding protein-related protein 1D isoform X1	520	693	-	-
	Trre5g03203	815	MobiDBLite	consensus disorder prediction	46	65	-	-
	Trre5g03203	815	Pfam	Oxysterol-binding protein	435	788	IPR000648	GO:0008289
	Trre5g03203	815	SMART	PH_update	92	227	IPR001849	-
	Trre5g03203	815	Gene3D	-	520	687	-	-
	Trre5g03203	815	SUPERFAMILY	PH domain-like	95	229	-	-
	Trre5g03203	815	Gene3D	-	91	227	IPR011993	-
	Trre5g03203	815	Pfam	Pleckstrin homology domain	96	222	-	-
	Trre5g03203	815	ProSiteProfiles	PH domain profile.	91	225	IPR001849	-
	Trre5g03203	815	Coils	Coil	742	762	-	-
	Trre5g03203	815	Gene3D	-	731	794	-	-
	Trre5g03203	815	MobiDBLite	consensus disorder prediction	348	363	-	-
	Trre5g03203	815	SUPERFAMILY	Oxysterol-binding protein-like	430	801	IPR037239	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03203	Trre-Chr5	27672247	27678739	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03203	K20456		-	gmx:100788779	1480.31

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g03203	5	27672247	27678739	Trre5g03203	5	27672247	27678739	ECH