Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03175 ATGGCTTTATTTTCTCTCTTTCTCCTTACATTTCTTGTGTTAATATCATGTTCATCTTCCCAACTTCAAGAGTTTATAAGCATTGATTGTGGAGGAACAAGAAGTAACTACAGTGACACAACCACAGGGATAACATGGATTTCAGATTCTGAGATAATGAAACATGGAGAAAAAGTGGAAGTAATAAACCCTAATGGAAACCAAGTTCAGTATCAGAAAAGAAGAGATTTTCCAACAGATAGCAGAAAATATTGTTATACACTTGAAACTGAAGAGAGAAGAAGGTATTTGGTAAGAACAACTTTTCAGTATGGAAAATTGGAAAAGGGTGATACATATCCTCAGTTTCAACTTTATTTAGATGCAACAAAATGGGCTACTGTGTCAATTTATGATGATGAAAGAGTATATGTTAAGGAAATGATCTTTAGGGCGCCTTCGAATTCTGTTGATGTTTGTGTTTGTTGTGCTACAACTGGTTCTCCTTTTATATCTACTCTTGAGCTTAGGCCTTTGAATCTTTCTATGTATGCAACTGATTTTGAGGATGATTTCTTCTTGAAAGTAGCTGCAAGGATTAACTTTGGTGCTCCAACTGAGGATGCTGTCAGGTATCCGGAGGATCCATATGATAGAATATGGGAGTCTGATCTTGTTAAAAGACAAAATTTTCTTGTCGGGGTGGCAACAGGAACAGAAAGAATTAGCACAACAAGGAACATAGATATAGAGACGAGAGAATATCCACCGGTTAAGGTGATGCAAACTGCAGTTGTTGGCACAAAAGGGTTACTTACCTACAGACTTAATCTTGAAGACTTTCCTGGTAATGCTAGAGCTTATGCTTATTTAGCAGAGATTGAAGATTTAGGTCAGAATGAGACTCGGAAATTCAAATTGGAACAGCCTTATATAGCTGACTATAGCAATGCAGTGGTGAACATAGCTGAGAATGCTAATAGAAGCTACACTCTTTATGAACCAAGTTATATGAATGTGAGTTTGGAATTTGTTCTTTCCTTTTCCTTTAAGAGGACAGCGGATTCGACTAGAGGACCTCTATTAAACGCAATGGAAATAAGCAAATATCAAGAAATTGCTTCGAAGACCTTGAAGCAAGATTCAAATTCTGTAAATGCATTTGCCAACTTGTCCGATGAAATTATCCCGAAGAATGAAGGCGATCCTTGCGTTCCAACTTCCTGGGAATGGGTGAATTGTAGTACTATTACACCTCCAAGAATTACAAAGATAAACTTGACAAGAAGGAATTTGACCGGTGAAATCCCGCAAGAGCTCAACAATATGGATGCATTAGAAGAACTGTGGTTAGATGGAAACTCGCTTACCGGACAACTACCAGACATGAGCAATCTTATCAGTCTAAAGATTGTGCATCTAGAGAACAACAAATTGACCGGTTCACTACCGTCTTACCTCGGTAGCTTGCCAAGTTTACAAGCATTGTACATACAGAATAACTCATTTACCGGGGTTATACCAGCAGGATTATTATCTTCAAAAATCACTTTCAACTATGATGATAATCCTAGACTACATAAAAAGAACAAAAAGCATTTTCAGTTGATAATAGGAACTGCTATCGGAGTACTAGCGATTCTATTAGTCTTTTTCTTAGCAAGTTTGGTGTTATTGCATTACCTAAGGAAAAAGGCTTATGAAAAGAGAAGTGATGAAAAAGGTAAACACATAAACGGATACTCTTTTGGTGTGGATGGAAATTTAATGGATGAAGGTACTGCATATTATATTAATCTCTCGGATTTGAAAGAAGCTACAAACAATTTTTCAAAGAAAATTGGAAAAGGAAGCTTTGGTTCTGTCTATTATGGAAAAATGAAAGATGGAAAAGAGATCGCAGTTAAGACCATGACCGATCCATCCACCCATGGGAACCATCAATTTGCAACTGAGGTAGCTCTCTTATCAAGAATTCATCACAGAAACTTGGTTCCTTTGATTGGATATTGCGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCATAATGGAACTCTAAGGGATCACATTCATGAATGTTCGACTCAGAAACGATTCGACTGGTTAACTCGTCTTCGAATTGCAGAAGATTCAGCCAAAGGTCTCGAGTATTTACACACCGGATGCAATCCTAGTATCATTCACCGAGACGTAAAGACAAGCAACATTCTCCTAGACATCAATATGAGAGCAAAGGTATCAGATTTCGGACTGTCAAGACTCGCCGAAGAAGATTTAACTCATATATCAAGTGTTGCAAGGGGAACTGTGGGATACTTGGATCCTGAGTACTATGCAAATCAGCAATTGACTGAAAAGAGCGACGTATACAGTTTTGGGGTTGTTTTATTGGAACTGATATCGGGAAAGAAGCCTGTATCACCAGAAGATTATGGTCCAGAAATGAATATAGTTCATTGGGCAAGATCATTAATTCGTAAAGGCGATATAATTAGCATTATGGATCCTTTGCTAATTGGAAATGTGAAAACTGAATCAATATGGAGAGTTGCTGAAATTGCCATGCAATGTGTAGAACCACATGGTGCATCAAGGCCAAGGATGCAAGAAGTGATTTTGGCTATACAAGATGCTTCTAAGATAGAAAAAGGGACAGAAAGTCAACTAAAGATATCATCTTCAGGTGATTCAAAACCACAATCTTCAAGGAAAACTTTGCTTACAAGTTTTCTTGAAATTGAAAGTCCTGATTTATCAAATGGTTGTCTTCCATCAGCAAGATAA 2772 0.373 MALFSLFLLTFLVLISCSSSQLQEFISIDCGGTRSNYSDTTTGITWISDSEIMKHGEKVEVINPNGNQVQYQKRRDFPTDSRKYCYTLETEERRRYLVRTTFQYGKLEKGDTYPQFQLYLDATKWATVSIYDDERVYVKEMIFRAPSNSVDVCVCCATTGSPFISTLELRPLNLSMYATDFEDDFFLKVAARINFGAPTEDAVRYPEDPYDRIWESDLVKRQNFLVGVATGTERISTTRNIDIETREYPPVKVMQTAVVGTKGLLTYRLNLEDFPGNARAYAYLAEIEDLGQNETRKFKLEQPYIADYSNAVVNIAENANRSYTLYEPSYMNVSLEFVLSFSFKRTADSTRGPLLNAMEISKYQEIASKTLKQDSNSVNAFANLSDEIIPKNEGDPCVPTSWEWVNCSTITPPRITKINLTRRNLTGEIPQELNNMDALEELWLDGNSLTGQLPDMSNLISLKIVHLENNKLTGSLPSYLGSLPSLQALYIQNNSFTGVIPAGLLSSKITFNYDDNPRLHKKNKKHFQLIIGTAIGVLAILLVFFLASLVLLHYLRKKAYEKRSDEKGKHINGYSFGVDGNLMDEGTAYYINLSDLKEATNNFSKKIGKGSFGSVYYGKMKDGKEIAVKTMTDPSTHGNHQFATEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHECSTQKRFDWLTRLRIAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGPEMNIVHWARSLIRKGDIISIMDPLLIGNVKTESIWRVAEIAMQCVEPHGASRPRMQEVILAIQDASKIEKGTESQLKISSSGDSKPQSSRKTLLTSFLEIESPDLSNGCLPSAR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03175 923 Gene3D Transferase(Phosphotransferase) domain 1 677 893 - -
Trre5g03175 923 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 677 884 - -
Trre5g03175 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Trre5g03175 923 SUPERFAMILY L domain-like 396 506 - -
Trre5g03175 923 Gene3D Ribonuclease Inhibitor 368 528 IPR032675 -
Trre5g03175 923 MobiDBLite consensus disorder prediction 881 901 - -
Trre5g03175 923 Gene3D Phosphorylase Kinase; domain 1 578 676 - -
Trre5g03175 923 ProSiteProfiles Protein kinase domain profile. 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03175 923 SUPERFAMILY Protein kinase-like (PK-like) 587 868 IPR011009 -
Trre5g03175 923 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 500 - -
Trre5g03175 923 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Trre5g03175 923 Pfam Malectin-like domain 28 362 IPR024788 -
Trre5g03175 923 FunFam serine/threonine-protein kinase PBS1-like 579 676 - -
Trre5g03175 923 Pfam Protein tyrosine and serine/threonine kinase 603 868 IPR001245 GO:0004672|GO:0006468
Trre5g03175 923 SMART serkin_6 601 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03175 923 PANTHER OS07G0107800 PROTEIN-RELATED 456 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03175 Trre-Chr5 27339859 27345472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03175 1 923 Receptor kinase-like Gene Family AT1G67720 67.922 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre5g03175 Malectin_like 1.5e-86 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03175 - - gmx:100807148 1545.41