Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03165 ATGGATAAGAAAAGGGTTTCTTTTATCTTCACCATAATCATCATCTTCATCTTCATATCAGGTTCAGAGAATCGTGAACAAGGTGGAAATTCAAGAAGCCATGGTGTTGTTGCAACCTCAAAAAACAGTGATGTTGTTGTTAACCAACCAGGTAGTAGCAAAACTGGTAATTCTTCTTCTAACTTGAATGTAGGACAATATCAGAATCATGGTAACAAATCTTCATTACCTGTGAATGAGAATTCCAATGGAAATTTTAATTCATATGAAGCATTACCACTTTTTAAGGATGTTCCGAATTCCGAAAAACCGAGTTTGTTTTTAAAAAAGCTTAAGATGTGTAGTGTTGTTTTTGACTTCACTGACCCCACCAAGCATCTCAAGGAAAAAGAGATTAAGAGACAAGCTTTGGTGGAACTTGTTGATTATGTGTCTTCTGTTAATGCTAAATTTACTGAGAATGTAATGCAAGAGGTTGTGAAGATGGTTTCTGTAAATATATTCAGAACACTAAGTCCTCAACCGCGCGAAAACAAGCTTGTTGATGGTGTTGAATTGGAGGAGGAGGAGCCTTCGATGGATCCTTCTTGGCCTCATTTGCAAATCGTGTATGAGCTTTTTCTTAGGTTTATTGCATCGCCTGAGCTGGATGCAAAGTTGGCTAAGAGATTCATTGATCAATCGTTCATTTTGAGGCTGCTTGATTTGTTTGACTCCGAAGATCCTAGAGAAAGGGAATACTTGAAAATGTCTTTGCATCGCATCTATGGCAAGTTAATGGCGCATCGCCCTTTCATCAGGAAATCAATCAATAACGTCTTTTTGAATTTTGTTTTCGAGACTGAGAAGCATAATGGGATTGCTGAGTTCTTGGAAATTCTTGGGAGTATCATTAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTGGTTCGTATATTGATTCCGTTGCACAAACCAAAGTGCTTGGCAATGTATCATCAACAGTTATCTTATTGCATTACTCAATTTGTGGAGAAAGACTGCAAGCTTGCTGATACTATCATTAGGGGATTATTGAAGTACTGGCCAATAACAAATAGTTCAAAGGAAGTTATGTTTCTAGGGGAGTTGGAAGAAGTTTTGGAAGCAACTCAACCTCCAGAATTCCAGCGATGTATGGTGCTATTGTTTCGCCGTGTTTCTCATTGTTTGAACAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCTTGTGGAATAACGATCACATTGTGAACTTAATCAAACAAAACTGCAAAGTGATACTGCCAATCATATTTCCTGCATTGGAGAGAAATACTAAAACTCATTGGAATCAAGCTGTTCATAGCTTGACTTTAAATGTTCAGAAGATTTTTCACGATCTCGATCCTGATCTGTATAAAGAATGCTTACAAAAGTTCGAGCAAGACAAATCAAAGGAAGAGGAAGTGACAGCAGGACGTGAAGCCACGTGGAAACGCTTGGAGGAGGTTGCCGCAAAGAAAGCTGCAAGTAACGAAGCCGTGCTTATTAGTAAAGCACTACCTCGCAAATCTGCAGGTTAG 1578 0.3866 MDKKRVSFIFTIIIIFIFISGSENREQGGNSRSHGVVATSKNSDVVVNQPGSSKTGNSSSNLNVGQYQNHGNKSSLPVNENSNGNFNSYEALPLFKDVPNSEKPSLFLKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSVNAKFTENVMQEVVKMVSVNIFRTLSPQPRENKLVDGVELEEEEPSMDPSWPHLQIVYELFLRFIASPELDAKLAKRFIDQSFILRLLDLFDSEDPREREYLKMSLHRIYGKLMAHRPFIRKSINNVFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVLLFRRVSHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTKTHWNQAVHSLTLNVQKIFHDLDPDLYKECLQKFEQDKSKEEEVTAGREATWKRLEEVAAKKAASNEAVLISKALPRKSAG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03165 525 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 99 502 - -
Trre5g03165 525 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 92 503 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g03165 525 PIRSF PP2A_B56 19 524 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g03165 525 Gene3D - 99 502 IPR011989 -
Trre5g03165 525 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 43 510 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre5g03165 525 SUPERFAMILY ARM repeat 104 485 IPR016024 -
Trre5g03165 525 MobiDBLite consensus disorder prediction 28 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03165 Trre-Chr5 27220932 27226638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03165 K11584 - gmx:100811438 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03165 5 27220932 27226638 Trre5g03165 5 27220932 27226638 ECH