Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03164 ATGACGGAAAAAGAAGGAAAGCGTGAGAAAATGGAAAACACTAAGAAAACCAGAGGCATCATCGCCTTCACCGGAACTGCTGCAGTACTCGCAATCGCCGCTAACATCGTTATCTCCGCCATTAAACACAAGAAGGAAAAAAATGCAAAGAAGAAAGATCTTGTAGGTTCTAAGGTTCGTGTTAACCTATCTGCATCTGAGATTGTTAAGTTAGCAAACCAAATCATTGCTAAGTCAAATGAGGTTCATAATTCTGTTGCATCCGTGCCTCTCGATAAGGTTACATATGCAAATGTTATATCGCCTCTAGCAGAACTTCAAGCGCAGCAGTTTCCATTGATTCAATCTTGTTTGTTACCTAAGTTGGTATCTACCCGGGAGGATGTGCGCAAAGCAAGTGCAGAAGCGGAGCGAAGAATTGATGCGCATCTTGACATATGCAGCAAACGTGAAGACATATATCTTGTCGTTAAATCATTTGCAGTGAGGGGGGACTGGATTAATGCTGAAACCAAAAGCTTTGTTCAAATTCTGGTGAGAGATTTTAAGCGAAATGGACTGAACCTCAGTGCAAGCAAAAGAGAAGAGTTGCTGCGTATAAAAGCTCAGATTGATGAGTTAAGCATTATATATATCCAAAATCTCAATGATGCTAGCGCATTTCTTCCCTTCAATGAGGCAGAGTTAGCAGGATTACCTCCAGAGTTTCTCAAGGGTTTAGATAAATCTGATAATGGACAATTGAAGATCTCCTTGAGAAGCCATCATGTCACAGCTGTACTTGAATTTTGCAAGGTAGGAACTACAAGAAGGATGGTATCACGGGCATATGGAAATCGATGTGGAGAAGCCAATCTTTCTATTTTAGAAAGTCTGGTGCAACAGCGTCATAAATATGCTCGTTTACTTGGCTATTCGTGCTATGCCGAGTATGCTGTTGATGTTAGGATGGCAAAATCACCAACAAAGGTGTTTGAGTTTCTGAATGACATATCCATACGTATAAATGACATGGCTATAAGAGAACTTGATATCTTGAAGGATTTGAAGAAGAAAGAGGAAGGGGAGTTTCCATTCGGAATCGAAGACCTACTGTATTATGTAAAACGGGTTGAGGAGCAGAATTATGATTTGGACTTTGGCGAGATCAAGCAATACTTACCAATTAGTTTAGTTCTATCTGGAATCTTCAAAATTGTCCAGGATCTTTTTGGTTTAAGGTTTGAGGAAATTGCAGGAGCTGAAGTTTGGCATTGTGATGTTCGTGTATTCTCAGTATTTGACTTAAGTTCAAGTGAACTCTTGGGTTATTGCTACCTTGATTTGTTCTCAAGGGAAGGAAAATACGGTCACAGTTGTGTGGTGCCTCTCCAGAACAGTGCATTAACAATCAGTGGGACACGACAGATACCCGTCGCATTACTAATATCTCAGTGTCAAAAGGATTCTGACTGTAGCCCTGGATTATTGCGGTTTTCTGAAGTGGTCAGTCTTTTCCGCGAGTTTGGCCATGTGGTTCAACACATTTGCAACCGTGCTTCATTTGCTAGAGTTTCTGGAATACGAGTTGATCCCGACTTCGTAGAAATACCTGCTCAAATTTTACAAAACTGCTGTTATGAAAGCTATTTTCTGAAGTTGATTTCTGGATTTCATCAGGATATCACAAAACCCTTAAAGGACGACCTATGCAAATCAATTAAAAGATGGAGATATTCTTCTTCCACACTTAAATTGAAGCAAGAGATTCTATACTGTCTTTTTGACCAAATCATACATTCTGCGGATAACATAGATATTCGTGAGTTATTCAAGCATCTTCATTCGAAGGTGATGTTAGGGTTGCCTGTATTAGAAGGAACCAATCCTGCTTCATGCTTTCCTTTTAGCGTTGTTGGTTATGAGGCAGCTTGCTACAGTCGTATATGGAGTGAGGTTTTTGCCGCGGATATTTTCGCCTCAATGTTTTGCAATGGTGTTTCAAACCAGCTTCCGGGCTTGCAATTTAGGAACAAGGTATTGGCCCCAGGCGGAACGAAGGATTCTTTTGAAGTAATGTCAGAATTTCTAGGAAGAGAACCATCAATTAAAGCCTACGTTGAGAACAAAACCATGTATACTTTGTAA 2127 0.4024 MTEKEGKREKMENTKKTRGIIAFTGTAAVLAIAANIVISAIKHKKEKNAKKKDLVGSKVRVNLSASEIVKLANQIIAKSNEVHNSVASVPLDKVTYANVISPLAELQAQQFPLIQSCLLPKLVSTREDVRKASAEAERRIDAHLDICSKREDIYLVVKSFAVRGDWINAETKSFVQILVRDFKRNGLNLSASKREELLRIKAQIDELSIIYIQNLNDASAFLPFNEAELAGLPPEFLKGLDKSDNGQLKISLRSHHVTAVLEFCKVGTTRRMVSRAYGNRCGEANLSILESLVQQRHKYARLLGYSCYAEYAVDVRMAKSPTKVFEFLNDISIRINDMAIRELDILKDLKKKEEGEFPFGIEDLLYYVKRVEEQNYDLDFGEIKQYLPISLVLSGIFKIVQDLFGLRFEEIAGAEVWHCDVRVFSVFDLSSSELLGYCYLDLFSREGKYGHSCVVPLQNSALTISGTRQIPVALLISQCQKDSDCSPGLLRFSEVVSLFREFGHVVQHICNRASFARVSGIRVDPDFVEIPAQILQNCCYESYFLKLISGFHQDITKPLKDDLCKSIKRWRYSSSTLKLKQEILYCLFDQIIHSADNIDIRELFKHLHSKVMLGLPVLEGTNPASCFPFSVVGYEAACYSRIWSEVFAADIFASMFCNGVSNQLPGLQFRNKVLAPGGTKDSFEVMSEFLGREPSIKAYVENKTMYTL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03164 708 FunFam Probable thimet oligopeptidase 388 538 - -
Trre5g03164 708 Gene3D Collagenase (Catalytic Domain) 388 538 IPR024079 GO:0008237
Trre5g03164 708 Coils Coil 336 356 - -
Trre5g03164 708 FunFam Thimet oligopeptidase 1 41 184 - -
Trre5g03164 708 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 62 701 - -
Trre5g03164 708 CDD M3A_TOP 70 701 - -
Trre5g03164 708 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 37 704 IPR045090 GO:0004222|GO:0006508
Trre5g03164 708 Pfam Peptidase family M3 264 702 IPR001567 GO:0004222|GO:0006508
Trre5g03164 708 Gene3D Neurolysin, domain 3 194 700 IPR024077 -
Trre5g03164 708 Gene3D Endopeptidase. Chain P; domain 1 36 184 IPR024080 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03164 Trre-Chr5 27202902 27211493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03164 K01392 - gmx:100793518 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03164 5 27202902 27211493 Trre5g03164 5 27202902 27211493 ECH