Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03099 ATGTCGCTCGCATCGTTCTCCATTGTCCGGCACCACCGCACGGTGGCTACCGCCGTCCCTCAACTTCTCCGGCGATTCAGTTACTTACCAATTTCCGCCAGACAAGAAAACCCTAAGCATGATGCCCCAAGCAAGAACCTCCTAAAAGCAAAACACACATTGAAAAACTTCTCCTCTCTCGCTCCCATTTTCTCACGCGAAGAAAATCCTCCTCTCTCCGAATCTCAAGCCATTGGCACCGTCGCTTCTTCACAAGCCAATTTCATGCGCGTAATCGTCCAATCAGAATCTTCTACAACCATCCACGATGCTTCCGGAGGTGTGGAGCTTTTGTGCGTTGTTAGAGCTTTGCTGAAGAAGATAAAACGTAGGGTTATGGTTGGTGATAAGGTTCTAGTAGGTTCTGTTGATTGGGTGGATCGTAGAGGTATGATTGAAAACGTGTTTCAGAGAAATTCTGAGATTCTTGATCCTCCAGTAGCTAACGTGGATCATTTACTTGTTCTCTTCTCCCTTGATCAACCTAAGCTTGAGCCATTTACGCTCACACGGTTTTTGGTGGAAGCTGAATCCACTAGGATTCCTTTCACTCTAGCGCTTAACAAGACTGAGCTTGTGGATAAAGAGACCCTGGATTCCTGGAAGGCTAGGTTTCGTGACTGGGGCTACCAGCCAATTTTTTGCAGTGTTGAATCCGGACATAACCTTGATCTTCTTGCATTCCAATTGAAAGATCAAACAACAGTGATTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAATCCTCGTACTTGTGATACTACAGATGGGGAGAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTTTGAGGACCAGCGAGTTGCGGAGGTTTCAACAAGAAGTGGCAGAGGGAAGCATACTACTCGTCATGTCTCTCTGCTTCCATTATCTGGAGGAGGTTATCTTGCCGATACTCCTGGATTTAACCAGCCTAGTTTGTTGAAAGTGACAAAGCAATCTCTTGCACAAACTTTTCCTGAAATCAGGAAAATGCTTGGTGGAGATGAGCCTAAAACATGTTCATTCAGCAATTGCTTGCATCTTGGTGAACCTGGCTGCATTGTAAAGGGGGATTGGGAAAGATATTCATTCTATTTTCAACTTCTTGATGAAATTAGAATCCGAGAGGAGTTTCAGTTGAGGACATTTGGAACTAAAAGAGAAAGCGATATAAGGTTAAAAATAGGAGATATGGGTTCTAAGCAAGCAGAACCACGTTTGGAGCTTAAGAAGCATAGAAGACAATCTCGGAAGAAGACTAACCAATCTATTTTAGATGATCTAGATGACGACGACAATTTGCTTGACGAGGACGATGACAACGACCCCTTTTTAAATGCTATGAGGAACGGAAATCCTTAA 1425 0.44 MSLASFSIVRHHRTVATAVPQLLRRFSYLPISARQENPKHDAPSKNLLKAKHTLKNFSSLAPIFSREENPPLSESQAIGTVASSQANFMRVIVQSESSTTIHDASGGVELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGMIENVFQRNSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPFTLALNKTELVDKETLDSWKARFRDWGYQPIFCSVESGHNLDLLAFQLKDQTTVIVGPSGVGKSSLINALRSNPRTCDTTDGENWFEPILGSKWFEDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLGGDEPKTCSFSNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKRESDIRLKIGDMGSKQAEPRLELKKHRRQSRKKTNQSILDDLDDDDNLLDEDDDNDPFLNAMRNGNP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03099 474 Pfam RsgA GTPase 148 334 IPR010914 GO:0003924|GO:0005525
Trre5g03099 474 MobiDBLite consensus disorder prediction 423 474 - -
Trre5g03099 474 SUPERFAMILY Nucleic acid-binding proteins 77 151 IPR012340 -
Trre5g03099 474 CDD YjeQ_EngC 161 391 IPR004881 GO:0003924|GO:0005525
Trre5g03099 474 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 48 454 IPR004881 GO:0003924|GO:0005525
Trre5g03099 474 MobiDBLite consensus disorder prediction 448 462 - -
Trre5g03099 474 Gene3D - 149 334 IPR027417 -
Trre5g03099 474 Gene3D Probable gtpase engc; domain 3 336 398 - -
Trre5g03099 474 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 77 397 IPR004881 GO:0003924|GO:0005525
Trre5g03099 474 NCBIfam ribosome small subunit-dependent GTPase A 125 268 IPR004881 GO:0003924|GO:0005525
Trre5g03099 474 Gene3D - 72 148 IPR012340 -
Trre5g03099 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 394 IPR027417 -
Trre5g03099 474 ProSiteProfiles EngC GTPase domain profile. 161 330 IPR010914 GO:0003924|GO:0005525
Trre5g03099 474 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 153 332 IPR030378 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03099 Trre-Chr5 26170680 26173935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03099 K06949 - gmx:100796145 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03099 5 26170680 26173935 Trre5g03099 5 26170680 26173935 ECH