Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03071 ATGAAACATCAAATATTCATGTGCCTATGTGTTCTGGCTCTGATCATTGATGTCTCTAATGGAGCTGACAATCTAGCTCAGAAGTGTGGACAAGTGGTTCAAAAAGTGATACCATGTTTGGATTTTGCAACTGGAAAAGCAGATGCACCTAAGAAAGAATGCTGTGATGCTACTAACAGTATTAAGGAGACGGATCCAGAGTGTTTGTGTTATATCATTCAACAGACACATAAGGGTAGCCCTGAAAGCAAGAGTATGGGTATTCAAGAAGATAAGCTTCTTCAACTTCCAACCGTTTGTCATGTCAAAGATGCCAACATCACTGATTGTCCCAAGCTTTTGGGTTTATCTCCAAGTTCCCCTGATGCTGCAATCTTCAAAAATGCTTCAAAGATAAATCCTCCTGCATCTTCTTCATCATCTGCTTCATCAACAGGAACAACTACACCATCAACACCAACCCCATCAAGTGATTCATATAACCTTAGACCTGTTATGATCACTGAGGTGATGATGGTGACATTGGCCATTGTTCTTGGTGCAGACTTTACAGCTTTGAATTGGTTTGCATCTCTGTTTTCTTCTGCAATGCTTAATTTCTTTCTCGAATTTTGGGAACTGGCTATCATTTAA 633 0.3981 MKHQIFMCLCVLALIIDVSNGADNLAQKCGQVVQKVIPCLDFATGKADAPKKECCDATNSIKETDPECLCYIIQQTHKGSPESKSMGIQEDKLLQLPTVCHVKDANITDCPKLLGLSPSSPDAAIFKNASKINPPASSSSSASSTGTTTPSTPTPSSDSYNLRPVMITEVMMVTLAIVLGADFTALNWFASLFSSAMLNFFLEFWELAII 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03071 210 SMART aai_6 29 110 IPR016140 -
Trre5g03071 210 CDD AAI_LTSS 38 102 - -
Trre5g03071 210 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Trre5g03071 210 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Trre5g03071 210 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Trre5g03071 210 Pfam Probable lipid transfer 20 110 IPR016140 -
Trre5g03071 210 Gene3D - 26 107 IPR036312 -
Trre5g03071 210 MobiDBLite consensus disorder prediction 132 158 - -
Trre5g03071 210 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 110 IPR036312 -
Trre5g03071 210 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 11 166 IPR043325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03071 Trre-Chr5 25698693 25702357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03071 28 179 Acyl Lipid Metabolism Gene Families AT1G27950 47.368 1.29e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03071 - - adu:107482371 209.534