Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03070 ATGTCTCAGGTTGATAACAGAAATTCTTCAGCTGTTAAGCGTGCCAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGTCCCAGCTGTGGTAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCGAGGCCTGCTGATCATAATTCGAAACCTGCTGTCAAGCCTCTTCATGCTCCACAGGCCTATTCAGCTCCAGCCCCTTATTTAGGTGCCAATCCTCCCCCTTCAATATATCTTGGTGTCCCACCATATGGTCCGTCTTTATTCAATGGATCACCTGTTCCTCCCTATGAGGTTCCTTTTTCTGGAGGTTCAGCCTATCACTACAATTATGGAGGTCGCCTTTCTGCTGGCAGTCCGTATAGACCATTGCATCTATCGGCACCAGCACCATACACAAGTGGACCCATGGTGGGAAACGGTGGGATCTATGCCATGCCCCAGCTATTGGATCGCTATGGCCTCGGTGTCCCTATTGGACCTGGAGCAATGCAGGCTACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGAGCAGATTCCACTCGTGACAATGATTGGGCATGTCCAAAATGTGGGAACGTCAATTTCTCATTTAGAACTGTTTGCAACATGAGAAAGTGCAACACTCCCAAGCCTGGATCCCAGGCCTCAAAGTCTGACAAGAACTCTAAGCAAAAGATGCCCGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCGTTCCGAACAAAGTGCAACAGGCAGAATTGTGGTGCTGACAAGCCTGCAGATTTGGAAAAATCTCCCTCGTCATCTCCAGATCAAAATGATCAGTGA 861 0.475 MSQVDNRNSSAVKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKPAVKPLHAPQAYSAPAPYLGANPPPSIYLGVPPYGPSLFNGSPVPPYEVPFSGGSAYHYNYGGRLSAGSPYRPLHLSAPAPYTSGPMVGNGGIYAMPQLLDRYGLGVPIGPGAMQATRPGFFRDDKSQKKGADSTRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADLEKSPSSSPDQNDQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03070 286 MobiDBLite consensus disorder prediction 180 195 - -
Trre5g03070 286 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Trre5g03070 286 SMART zf_4 242 268 IPR001876 -
Trre5g03070 286 SMART zf_4 24 50 IPR001876 -
Trre5g03070 286 SMART zf_4 196 222 IPR001876 -
Trre5g03070 286 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 174 230 - -
Trre5g03070 286 Gene3D - 14 54 - -
Trre5g03070 286 Gene3D - 229 272 - -
Trre5g03070 286 Gene3D - 187 226 - -
Trre5g03070 286 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g03070 286 MobiDBLite consensus disorder prediction 11 25 - -
Trre5g03070 286 MobiDBLite consensus disorder prediction 173 195 - -
Trre5g03070 286 MobiDBLite consensus disorder prediction 221 245 - -
Trre5g03070 286 SUPERFAMILY Ran binding protein zinc finger-like 189 226 IPR036443 -
Trre5g03070 286 Pfam Zn-finger in Ran binding protein and others 240 270 IPR001876 -
Trre5g03070 286 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Trre5g03070 286 Pfam Zn-finger in Ran binding protein and others 195 224 IPR001876 -
Trre5g03070 286 SUPERFAMILY Ran binding protein zinc finger-like 234 272 IPR036443 -
Trre5g03070 286 MobiDBLite consensus disorder prediction 267 286 - -
Trre5g03070 286 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03070 Trre-Chr5 25669641 25672903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03070 181 280 EF-hand Containing Proteins AT1G55040 33.333 2.67e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03070 - - tpra:123907979 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03070 5 25669641 25672903 Trre5g03070 5 25669641 25672903 ECH