Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03063 ATGCTCAAGTACCTCATCTCTCAGCTTCACCAACAACTCTTCCACGACTCCAATAATCATATTCATTCTTCTTCTTCCATTCTTCTTCAACAACCTTCTCTTCCTACCACCATCTTCCTCCACCCTCCTCCTCCCACTACCACCAGATGGACCTCCTTTGATAGTGAAGATAGCTCTGTAGATGACTGTTGTGACCTTGTAATGGCAGCTGGAAAGTCTCATAGTTTCAGGATGTCGGAGCCTCTAAAGTCTCCACCCGCTAAGAAGCCTCGAAAAGATCGAAGTAGGGGCAAATCCTTATTAAGATCCTGTACAAGTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTAATTGCACGACTTCCCATTGCGGCATTTTTCCGCTTCCGCTCTGTGTGCCGGCAATGGAATTCCTTGCTGGCTTCTCAAAGCTTTTCTCAGCACTGTGCCCAAGTCCCACAAGAAAATCCATGGTTTTACACCATAACCCATGAAAATGTGAATTCAGGAGCCATGTATGATCCTTCTTTGAAAAAGTGGCATCACCCGTCTATATCACCACTGCCCACAAAGTTGATCGTTTTGCCAGTTGCTTCGGCAGGGGGTTTAGTTTGTTTTCTTGACATTGGCCACCGTAACTTCTATGTGTGTAACCCGCTGACTCAATCCTTCAAGGAGTTGCCAGCTCGGTCGGTTAAGGTCTGGTCTCGCGTTGCTGTAGGGATGACGGTAAATGGAAATTCAATTGGTTCAGGCTACAAAATCCTATGGGTCGGTTGTGATGGAGAATATGAAGTTTATGACTCGGTGAAAAACTCTTGGAGTTGTCCAGGAAACATGCCTGGAAGTGTGAAGCTGCCATTGTCCCTTAACTTTAGGTCACAAGCTGTCGCTATTGACAGCACACTTTACTTCATGCGTTCAGATCCAGAAGGGGTTGTTTCCTATGATGTGGCAACAGGGGTTTGGAAGCAGTACATAATCCCAGCGCCGCTGCATCTGACTGATCACACTCTGGCTGAGTATGACGGTCAGATCATGCTTGTGGGGTTGCTCACAAAGAATGCAGCCACATGTGTATGCATATGGGAGCTGCAGAAAATGACACTCTTGTGGAAGGAGGTAGACAGAATGCCAAATATATGGTGCTTGGACTTTTATGGTAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAGATGAATAGGTTGGTTACTTACAACATAGCGAGGAAGGAATGGCTGAAGGTTCCCGGATGTGTGGTGCCGCATGGGAAGAAACGGCAGTGGATAGCATGTGGTACTGCATTTTATCCATGCCTGACTGCTGTGGTTTGA 1392 0.4598 MLKYLISQLHQQLFHDSNNHIHSSSSILLQQPSLPTTIFLHPPPPTTTRWTSFDSEDSSVDDCCDLVMAAGKSHSFRMSEPLKSPPAKKPRKDRSRGKSLLRSCTSEVMEQEIWKDFPEDLFEAVIARLPIAAFFRFRSVCRQWNSLLASQSFSQHCAQVPQENPWFYTITHENVNSGAMYDPSLKKWHHPSISPLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTVNGNSIGSGYKILWVGCDGEYEVYDSVKNSWSCPGNMPGSVKLPLSLNFRSQAVAIDSTLYFMRSDPEGVVSYDVATGVWKQYIIPAPLHLTDHTLAEYDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPHGKKRQWIACGTAFYPCLTAVV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03063 463 Pfam F-box domain 114 152 IPR001810 GO:0005515
Trre5g03063 463 SMART fbox_2 117 157 IPR001810 GO:0005515
Trre5g03063 463 MobiDBLite consensus disorder prediction 75 101 - -
Trre5g03063 463 SUPERFAMILY Galactose oxidase, central domain 178 442 IPR011043 -
Trre5g03063 463 Gene3D - 156 449 IPR015915 GO:0005515
Trre5g03063 463 CDD F-box_AtFBW1-like 116 153 - -
Trre5g03063 463 PANTHER BNACNNG10540D PROTEIN 95 445 - -
Trre5g03063 463 FunFam F-box only protein 6 164 450 - -
Trre5g03063 463 FunFam F-box only protein 6 114 153 - -
Trre5g03063 463 Gene3D - 114 153 - -
Trre5g03063 463 SUPERFAMILY F-box domain 109 197 IPR036047 GO:0005515
Trre5g03063 463 ProSiteProfiles F-box domain profile. 111 156 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03063 Trre-Chr5 25542533 25545931 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03063 - - gmx:100810179 780.4