Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03046 ATGGTAGAAGAAGGTAATAGTTTGAAGATGATGTTTCCTATGGAGAAGAGAGCATTGGATTGTCTTGGTAAAGGTTTCGATCTAACAAGTGATTTTAGAATGAAATTTTCAAAGGGATTAATTAATGGTGGAAAGTTAGTGTTGATTGATGAAATGAACAAAAGGGATATTATGGTTCCTGGTGGAGTTATTATTCAAGATGTTTCAGAAGATATTCGATGTGATAAAGGTGATCGTGTTCGGTTCAAATCTGATGTTCTTCAATTCAATCAGATGTCTGAAATGCTTAATCAGAAATCAGCTATACAAGGAAAAATTCCTTCTGGATATTTTAATGCAGTGTTTGATTTAAGTGGCGATTGGTTTCGTGACGCTCAAGACATCAAATCTCTTGCATTTGATGGTTACTTCATTTCGCTTTACTATTTGCACTTAACTGCTTCACACCTTAAACTGCAAGAGGAAGTTAAAAAGTCTGTTCCAGCACATTGGGATCCAGCTTCATTGTCCAGGTTTATTGCGACGTATGGTACACATATAATAGTAGGTATGGCTGTTGGAGGTCAAGATGTAATTTGTGTCAAGCAAAAACATTCTTCAAAGGTTTCTCCAGGTGATCTCAGAAGACATTTAGAGGATTTAGGAGATTTTTTGTTTTCAGATCTAAGAAGCCCTTCTCTACTAGAGAGGAAGTCGACAACAGAAGCCAAACAAAAAGTTCCGGAGGTTTTTAATCGTGTGATGCAATCAAGCACAATGCAGTTCACAAGTATTTCAGAAACGTCAAGCAAAGATGGTCTCACTATCATTTGTTCAAAAAGAGGAGGAGATGTTTTTAAGCACAGTCACTCAAGTTGGCTTCAAACAATGACTTCTAATCCCGAAGCAATCCACTTCAAATTTGTTCCGATTTCATCACTTCTCACGGGAATTCCTGGAAGTGGCTATCTTAGTCATGCAATCAATTTGTATTTAAGATATAAGCCCTCTCCAGAAGACTTGCAATACTTCTTGGAGTTTCAAATTCCTAGAGAATGGGCACCCATGTTTTCTGAGCTGCCTTTGAGGCATCAAAGGAAAAAGACTAATTCTCCTCCTCTTCAGTTTAGTTTCATGTCTCCAAAGCTTCATATCAATTCTACACAGGTAGCAAGTGAACAAAAACCCGTGGTTGGTCTCCGATTATACTTGGAGGGAAGGAAATGTGATAAACTTGCAATACATATACATCATCTTTCAAGCCTTCCAAATACAATGATCCTCTCTTCAACCGCTACAACAATGTCGCGAGGATCTGATGACGACGAATCAAGTGACCAATTCGCGGAACCTATAAGATGGAAAAGATTCGCGCACGTGTGCACCTCAGTTGTTAAATATGACCCTAACTGGTTGCATGAATCAAATTCAACGGGTGTTTATATTGTAACGGGTGCTCAACTCATTAGCAAAGGGAATTGGCCGAGGAATGTGCTTCATTTGCGCCTTTTCTTCACTCACATACCAAATTGCAGCATCAGGAAAATAGAATGGGATGCTGCACCAGAGACTTCAAAAAAATCGTCTTTCTTCACAAATCTGAGCACAACATTTTCATTCACACAACAAAGTGTTACTGCTAAACAGAAACAGGCACAGCAGCAGGCTGCCGCAACTGCACTAAACTCTGGTGTTTATCCGAATGGTCCGCCTGTGCCTGTTCGTTCTGCTAAAATGCTTAAATATGTGGAGACATGTGAGGTTGTTCGAGGACCTCACGATGCACCTGGGCATTGGTTGGTAATTGCTGCTAAGCTTGTGACAGATGGTGGTAAAATTGGATTACAAGTCAAGTTTGCATTGTTAGATTACGAGTGA 1857 0.3953 MVEEGNSLKMMFPMEKRALDCLGKGFDLTSDFRMKFSKGLINGGKLVLIDEMNKRDIMVPGGVIIQDVSEDIRCDKGDRVRFKSDVLQFNQMSEMLNQKSAIQGKIPSGYFNAVFDLSGDWFRDAQDIKSLAFDGYFISLYYLHLTASHLKLQEEVKKSVPAHWDPASLSRFIATYGTHIIVGMAVGGQDVICVKQKHSSKVSPGDLRRHLEDLGDFLFSDLRSPSLLERKSTTEAKQKVPEVFNRVMQSSTMQFTSISETSSKDGLTIICSKRGGDVFKHSHSSWLQTMTSNPEAIHFKFVPISSLLTGIPGSGYLSHAINLYLRYKPSPEDLQYFLEFQIPREWAPMFSELPLRHQRKKTNSPPLQFSFMSPKLHINSTQVASEQKPVVGLRLYLEGRKCDKLAIHIHHLSSLPNTMILSSTATTMSRGSDDDESSDQFAEPIRWKRFAHVCTSVVKYDPNWLHESNSTGVYIVTGAQLISKGNWPRNVLHLRLFFTHIPNCSIRKIEWDAAPETSKKSSFFTNLSTTFSFTQQSVTAKQKQAQQQAAATALNSGVYPNGPPVPVRSAKMLKYVETCEVVRGPHDAPGHWLVIAAKLVTDGGKIGLQVKFALLDYE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03046 618 SMART MACPF_8 128 326 IPR020864 -
Trre5g03046 618 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 5 338 IPR020864 -
Trre5g03046 618 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 15 617 IPR044663 GO:0006952|GO:0012501|GO:2000031
Trre5g03046 618 Pfam MAC/Perforin domain 111 324 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03046 Trre-Chr5 25289813 25292710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03046 - - gmx:100781070 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03046 5 25289813 25292710 Trre7g04552 7 53521418 53525715 PCT