Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03043 ATGAGCATCTTCTCTGCAACGCTAGGTTCATTCGGTGCTATCTCTTCCCTTTCACTCTCACATTCACATTCACAACAACAACAACAACAACAACCTGACCCTTTCAATTTCCCTAAATGCCCCCACAAGTTACATTACTATCGTTCTAAAATCATGATGGTTTCTAGCAGTAATAATACTCATATTGATGAAGTCGACAATGGTCTTCTTCAACGCCCTTCTGCTCCTAACTCTCTAGATACCCTTCGTCAAGCCAGGAGATCGTCAGATTGGAAGGCTGCAAACGCATACAAAGATAGTGGACTCATTTACAATGGTAGGGTTGAGGGTATTAATTCTGGCGGCTTGCTGCTTCGGTTTTACTCTATCATGGGCTTTCTCCCATATCCACAGTTGAGCCCATCACATTCATGTAAAGAACCAGATAAACCTATCCAAGAAATTGCAAGAGACATGCTTGGTTCCATCTTATCAGTGAAGGTAATTGATGTAAATGAAGAGACAAAGAAATTGGTCTTATCTGAAAAGAAAGCTTCCTGGTCTAAATATTCAAAATATGTCAACATAGGGGACATTTTTATAGGAAGAGTCAGTTCTGTTGAGGACTATGGTGCTTTTGTTGAGCTGCGGTTCCCTGACGATCTTTATCACCTTACTGGACTAATACATATCTCGGAAGTGTCATGGGATCTAGTTCAAGATGTCAGAGACTTCTTAAAAAAAGGAGAGGAAGTTAGGGCCAAAGTTATCAGTATTGATCGCTTAAAATCGAGGATTACACTGTCAATTAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTGATGCCACAGGATGGTTCAGCTGCTCCTTCCAGTGATAGCGATCGCATTGAGCCCCTTCCAGGACTTGAAACAATTCTTGATGAACTACTGCAGGAAGATGGCATATTCGATGCAAGAATCAGCCGTCAGGGGTTTGAAAAAAGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAATGCACCTCCCATGGAACAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTGCAGGAGATACATCTGAAAACATCCCTTGATCAGGAAGGTATCAAAAAGGCAATACAACGAGTTTTGGAGCGTGTTCCCTAA 1149 0.4204 MSIFSATLGSFGAISSLSLSHSHSQQQQQQQPDPFNFPKCPHKLHYYRSKIMMVSSSNNTHIDEVDNGLLQRPSAPNSLDTLRQARRSSDWKAANAYKDSGLIYNGRVEGINSGGLLLRFYSIMGFLPYPQLSPSHSCKEPDKPIQEIARDMLGSILSVKVIDVNEETKKLVLSEKKASWSKYSKYVNIGDIFIGRVSSVEDYGAFVELRFPDDLYHLTGLIHISEVSWDLVQDVRDFLKKGEEVRAKVISIDRLKSRITLSIKQLEEDPLLETLDKVMPQDGSAAPSSDSDRIEPLPGLETILDELLQEDGIFDARISRQGFEKRVVSQDLQLWLSNAPPMEQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLERVP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03043 382 Gene3D - 91 182 IPR012340 -
Trre5g03043 382 SMART S1_6 188 264 IPR022967 -
Trre5g03043 382 SMART S1_6 99 176 IPR022967 -
Trre5g03043 382 Gene3D - 183 266 IPR012340 -
Trre5g03043 382 ProSiteProfiles S1 domain profile. 101 176 IPR003029 GO:0003676
Trre5g03043 382 SUPERFAMILY Nucleic acid-binding proteins 188 277 IPR012340 -
Trre5g03043 382 SUPERFAMILY Nucleic acid-binding proteins 101 176 IPR012340 -
Trre5g03043 382 ProSiteProfiles S1 domain profile. 190 264 IPR003029 GO:0003676
Trre5g03043 382 PANTHER OS03G0844900 PROTEIN 18 382 - -
Trre5g03043 382 Pfam S1 RNA binding domain 187 264 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03043 Trre-Chr5 25262709 25268754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03043 - - gmx:100798303 525.013