Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03042 ATGGCTCTTTCTTCACCCAACTTGAATTGGAAAATTGGCCCAAGAAACATATCAAAATTGACTTCTTCTTCTATCAACTCAGATACCACAATTTCTTTATCATTTTCTGGAAGTGTATCAATGGGTCTTAACTTGAGGTTAAACCTTGCTTCAACTCGTTCTGTTAAGACTAGTAATAGGTTTAGGAACCATGGTTATTCTCCTTTGAAGGTAGTTTGCATTGATTATCCACGACCTGAAATTGATAATACTGTTAATTTCATTGAAGCTGCTTACTTGTCTTCAACCTTTCGTGCTTATCCTCCTCCTTCTAAACCTTTGAAGGTTGTTATTGCTGGTGCAGGACTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCTGGTCACAAGCCTATATTGCTGGAGGCAAGAGACGTTCTAGGTGGAAAGATTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACCGGCCTACATATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTCCTTCCATCTCCATTAAATGGTATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCTGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATACTCGGTGGACAAGCATATGTTGAGGCTCAAGATGGTCTTTCTGTTAAAGAATGGATGAGTAAGCAGGGCATTCCTGAGCGGGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCTCTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATTTTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCCCCCGAAAGACTTTGTATGCCAATCGTCGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCGCGCATTAAAAAAATTGAGCTAAACGATGACAGTACAGTGAAGAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTGTGCAGCACCAGTGGATATCCTGAAGCTTCTTCTGCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTTTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCGTTAACTTGTAAGGAATATTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCTGCTGAAGAATGGATTTCACGCAGTGATGAAGATATTATCGATGCTACAATGTCTGAACTTGCCAAACTTTTCCCTGATGAAATTTCTGCAGACCAAAGCAAGGCAAAAATTCTCAAGTACCACGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTGCCAAATTGTGAACCTTGTCGTCCCGTACAAAGGTCCCCTATAGAAGGTTTCTATTTAGCTGGAGATTTCACAAAACAAAAATATTTAGCTTCTATGGAAGGCGCCGTACTTTCTGGGAAGCTTTGTGCACAGGCTATCATACAGGATTCGGAGCTACTTACTACTCGGGGCCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA 1737 0.4053 MALSSPNLNWKIGPRNISKLTSSSINSDTTISLSFSGSVSMGLNLRLNLASTRSVKTSNRFRNHGYSPLKVVCIDYPRPEIDNTVNFIEAAYLSSTFRAYPPPSKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAILGGQAYVEAQDGLSVKEWMSKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIKSLGGEVHLNSRIKKIELNDDSTVKSFLLTNGKVIEGDAYVCAAPVDILKLLLPENWKGVPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIDATMSELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPVQRSPIEGFYLAGDFTKQKYLASMEGAVLSGKLCAQAIIQDSELLTTRGQKRIAQASTV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03042 578 SUPERFAMILY FAD/NAD(P)-binding domain 104 559 IPR036188 -
Trre5g03042 578 FunFam 15-cis-phytoene desaturase, chloroplastic/chromoplastic 104 566 - -
Trre5g03042 578 Gene3D - 105 567 IPR036188 -
Trre5g03042 578 PANTHER PROTOPORPHYRINOGEN OXIDASE 100 568 - -
Trre5g03042 578 Pfam Flavin containing amine oxidoreductase 116 558 IPR002937 GO:0016491
Trre5g03042 578 NCBIfam 15-cis-phytoene desaturase 108 557 IPR014102 GO:0016117|GO:0016166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03042 Trre-Chr5 25207866 25214450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03042 K02293 - gmx:547970 1014.22