Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03041 ATGGCCCTTCCTCCCAAAGTTCTCATGGTCGCAGAGAAACCTAGCATCGCTCTCTCCATCGCCACTGTTCTCTCTCACGGCAAGATGTATACAAGAAAAGGAAGCACAGAAGTTCATGAATTCGAGGGGAGGTTTCTTCGAGGGCCTGCGCGGTTTAAAGTTACATCAGTCATTGGACATGTATTCAGTGTAGATTTTCCTGGTAAATATCAAGATTGGGCGGCCACCGATCCCTTAGATCTTTTTCAAGCTCAGGTTATAAAGAGTGAATCAAATCCAAAGGCGCATATTTGTAGACATTTAAATCAAGAAGCTCGTGGGTGTCGTTATTTGGTATTGTGGTTGGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAGGTTATAGAATCAACCGGTTTCAATATAAATGATGTCTATCGTGCACGGTTTTCTTCTGTTACTGAGAAAGATGTTCTGAATGCTCTCGACAACCTTGTCAGACCCAACAGAGACGAAGCAATGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGTGTTGCCTTTACGCGATTTCAGACGGGTTTTTTCCAGGGAAAATATGGGAACCTAGATGCCAGAGTTATCTCCTATGGACCCTGTCAAACTCCAACTTTAGGATTTTGTGTGCAGCGGTATTTGCAAATAAATACATTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCACAGTGGCTATGAAATTCTACTAGAATGGCAGCGGAGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAACTGGTTGCTGAAGATGGAATTTTGGAAGTGACCGATATATCAGAAAAACAAGAAACAAAAGGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGTCCTCAGACGGCTATGCATCTAGCTGAACGCTTGTATACTCAAGGCTTCATCAGCTATCCACGAACAGAAAGCACAGCATACCCTCCATCATTTGACTTTCGTGGTGCGCTCTCTGCACAAAGAAATAATCCAACTTGGGGTAACTATGTAGAAGGGCTACTCACCAGTGGTTATCAGAAACCTCGATTGGGAACAGATGCGGGTGACCATCCTCCCATTACTCCGATGAGATCTGCATCAGAGGATATGCTAGGTAATGATGCTTGGAAGCTGTACCAATATATCTGTCAATATTTCATAGGGACAGTATCTCCGGACTGCAAGTATGTAAGGAAAAAGGTTGAATTTTCAGTTGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGCTTTACAGCTATTATGCCATGGTTGGCAATAAATGATAAAAGTATTCCATCATTTACAAAAGGGCAGAAAATAAAAGTATCAAAAGTTGAACTCTATGAAGGGAGTACCACACCTCCAGATTTTCTTACTGAAAGTGAGCTGATCTCTCTAATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAATATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGGAAGCTTGTCCCCACTACATTAGGCATAACTTTAGTAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATCCGTAGCTTTATTGAGCAACAAATTACTCTTATTGCTAAGGGTCAGGTCGATCATCATCGTGTAGTTCAGCATGTAATTGAACAATTCAAACAGAAGTTTTGTTACTTTGTCAAGAAGATTGAAGCCATGGATGCATTATTTGAAGCACAATTTTCTGCACTTGTAGATTCAGGGCGTATTTTGAGTAAATGTGGCAAATGCTTGCGGTATATGAAGTATATTTCTGCTCAGCCACCACGTTTGTATTGCGGTACATGTGAGGAAGTTTATGATCTTCCACAGAAGGGCATAATAAAGCTTTACAAGGAACTGACTTGTCCTTTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGTAAATCATTCCCACTATGCCCTTACTGCTACAGCAATCCCCCATTTGAAGGTATCGAATCACTCATCAATACGGCTAAAACTAGTACTTCTGGCAAGACTGGCAAGGGAGCTGGCATGCCATGCAACCTATGCCCCCATCCCACATGCCCAAACTCTTTAGTTTCCCAGGGTGTATGTGCTTGCCCGGAATGCAGTGGGACACTTGTCTTAGACCCTGTAAGTGCTCCCAAATGGCGACTGTGTTGCAATATGTGCAACTGCCTAGTTTTTCTTGCAGAGGGGGCTCATAGAATCTCGACAACTAAAGAACGGTGCCCTGAGTGTGATTCTTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGCAGACGGGTCTACATTGCACCGTGGTTGTATTCTTTGCGATGTATTACTACATTCCCTTGTGGAGATGAAACATGGGAGAGGCTTCAAGCGGATGAGTTCACGGGGAAGAGGAAGAGGAAGAGGGGGAAGAAAAGGCGGACGGGGTGGTAAAGTGATGGATCCAAAAATGAGTTTCCGAGATTTCTAA 2580 0.4275 MALPPKVLMVAEKPSIALSIATVLSHGKMYTRKGSTEVHEFEGRFLRGPARFKVTSVIGHVFSVDFPGKYQDWAATDPLDLFQAQVIKSESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIESTGFNINDVYRARFSSVTEKDVLNALDNLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTGFFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIHSGYEILLEWQRSKLFDINVAMMFQKLVAEDGILEVTDISEKQETKGRPVGLNTVNLLKVASSALGFGPQTAMHLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQRNNPTWGNYVEGLLTSGYQKPRLGTDAGDHPPITPMRSASEDMLGNDAWKLYQYICQYFIGTVSPDCKYVRKKVEFSVGGESFHCTGQHVITKGFTAIMPWLAINDKSIPSFTKGQKIKVSKVELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYFVKKIEAMDALFEAQFSALVDSGRILSKCGKCLRYMKYISAQPPRLYCGTCEEVYDLPQKGIIKLYKELTCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIESLINTAKTSTSGKTGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLCCNMCNCLVFLAEGAHRISTTKERCPECDSSIIEVDFNKKTTPLADGSTLHRGCILCDVLLHSLVEMKHGRGFKRMSSRGRGRGRGGRKGGRGGKVMDPKMSFRDF 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03041 859 Gene3D Topoisomerase I, domain 4 288 413 IPR013826 -
Trre5g03041 859 ProSiteProfiles Toprim domain profile. 6 149 IPR006171 -
Trre5g03041 859 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 623 IPR023405 -
Trre5g03041 859 SMART topIban2 138 234 IPR003601 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 Pfam DNA topoisomerase 162 573 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 Gene3D Topoisomerase I, domain 2 169 583 IPR013824 -
Trre5g03041 859 MobiDBLite consensus disorder prediction 844 859 - -
Trre5g03041 859 Pfam Toprim domain 7 146 IPR006171 -
Trre5g03041 859 SMART toprim5 6 137 IPR006171 -
Trre5g03041 859 MobiDBLite consensus disorder prediction 827 843 - -
Trre5g03041 859 CDD TOPRIM_TopoIA_TopoIII 6 159 IPR034144 -
Trre5g03041 859 CDD TOP1Ac 165 583 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 MobiDBLite consensus disorder prediction 826 859 - -
Trre5g03041 859 FunFam DNA topoisomerase 288 413 - -
Trre5g03041 859 PRINTS Prokaryotic DNA topoisomerase I signature 204 222 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 PRINTS Prokaryotic DNA topoisomerase I signature 322 331 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 PRINTS Prokaryotic DNA topoisomerase I signature 399 415 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 PRINTS Prokaryotic DNA topoisomerase I signature 497 511 IPR013497 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 SMART topIaneu2 280 535 IPR003602 GO:0003677|GO:0003916|GO:0006265
Trre5g03041 859 FunFam DNA topoisomerase 4 162 - -
Trre5g03041 859 Gene3D Topoisomerase I, domain 3 228 481 IPR013825 -
Trre5g03041 859 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 317 331 IPR023406 GO:0003917
Trre5g03041 859 Gene3D - 2 162 - -
Trre5g03041 859 PANTHER PROKARYOTIC DNA TOPOISOMERASE 6 803 IPR000380 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03041 Trre-Chr5 25193111 25203233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03041 K03165 - gmx:100791807 1578.15