Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03036 ATGTCGGAAATCGCCAGCACAGATCCCGAAGGTGTCGACGGAGTTCGCATGACATGGAACGTTTGGCCACGCACAAAAGTAGAAGCCAGCAAATGCGTCATCCCACTCGCCGCCACAATTTCTCTGATCCGTCCTTCTCCCGACATCCCTCGTCTCCCTTACGCTCCTCTCCGTTGCAAAACATGCACCTCCGCTCTCAACCCTTTCTGTCGCGTCGACTTCACCGCTAAGATCTGGATCTGTCCTTTCTGTTTCCAACGTAACCATTTCCCTCCTCATTACAACGCTATTTCTGAAACAAATCTCCCTGGTGAACTTTACCCTCAATATACAACCGTTGAATATGCTATTCCTCATTCCGATCCTAATCCGATTCCTTCTCCTGTTTTTCTCTTTCTCCTTGATACTTGTCTCATTGAAGAAGAGATCAATTTTGTTAAATCTGCTCTTGGTCGTGCTATTGGTCTTTTGCCTGATAATGCTCTTGTTGGTTTTCTTTCTTTTGGTACTCAAGTTCAGGTTCATGAATTGGGATTCTCTGATTTGTCTAAGGTTTATGTTTTTCGTGGTTCTAAAGAGATTCCTAAAGATCAGATTTTAGAACAGCTTGGTCTTGCTTCTTCTGCTGTTTCTGGTAGAAGACCTATTAAGGGTGTTAATCCTTTCCCCAATTCCGGTGTTTCGCGCTTTCTGTTGCCTGCATCTGATTGCGAATATACTCTCAATGCGCTGTTAGAGGAATTGCAGAGAGATCAGTGGCCTGTTCCTCCTGGAAAACGTCCTGCTCGCTGCACTGGTGTTGCATTGAGTGTTGCAGCTGGATTGCTCAGTGCTTGTAATCCTGGGACTGGGGCTAGAATCATAGCTTTGGTTGGAGGGCCATGCACTGAAGGACCTGGCACGATTGTGTCGAAAGATCTATCTGACCCGGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCGCCTTACTTTAAGAAAGCTGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCATGTTTTAGATGTTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTCGCAGTTGAAAGAACTGGTGGCCTTGTTGTCCTTTCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAGGCGTGTTTTTGAGGATGGGGAGCAATCTCTTGGTCTTTGTTTCAATGGAACCCTTGAGATAAATTGCTCAAAGGAAATCAAAATTCAGGGAGTCGTTGGACCTTGCACATCGTTGGAGAAGAAAGGGCCTTCTGTTGCTGATACCGTCATAGGAGAGGGCAACACAACAGTATGGAAGATGTGTGGCCTGGACAAGAGTACATGTTTGACTGTGCTGTTTGATCTCTCATCAAGTGAACGTTCAAATGCTTCAGGCGCTGCTGTCAACCAACAACTGTACCTGCAGTTCCTTACAAGTTACCAGAGCCCAGATGGTCAATTAGTGCTTCGTGTGACAACAGTAACTAGAAGATGGGTAGATAGTGCTGTTAGTACTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCTGCAGTTGTAATGGCTAGATATGCTTCTCTGAAAATGGAGACAGAGGAAACATTTGATGCCACACGGTGGTTGGATAGGTTCCTCATTCGCCTCTGTTCTAAGTTTGGGGACTACCGCAAGGATGATCCATCATCTTTTACATTAAATCCATCATTTTCTCTTTTCCCCCAGTTCATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTTCGCATGTTGTTGAACCGGGAAAATATTAGTAACGCGGCTGTTATGATTCAGCCATCTTTAATATCATATTCATTTAATTCACTGCCTGCACCAGCATTGTTGGATGTGGCTTCCATTGCTGCAGACCGGATTCTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGAAACTTGGGATACCAGAACCAACCAGAACACCAGGCTTTTGCACAACTATTACGAGCTCCACAAGATGATGCCCAAGCAGTTATTAGAGATCGATTCCCTGTTCCCAGATTGGTAGTGTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAATCCATCAGCAACATATAATAATGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTTACCGATGATGTTAGTCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2298 0.4408 MSEIASTDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATISLIRPSPDIPRLPYAPLRCKTCTSALNPFCRVDFTAKIWICPFCFQRNHFPPHYNAISETNLPGELYPQYTTVEYAIPHSDPNPIPSPVFLFLLDTCLIEEEINFVKSALGRAIGLLPDNALVGFLSFGTQVQVHELGFSDLSKVYVFRGSKEIPKDQILEQLGLASSAVSGRRPIKGVNPFPNSGVSRFLLPASDCEYTLNALLEELQRDQWPVPPGKRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDVFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFRRVFEDGEQSLGLCFNGTLEINCSKEIKIQGVVGPCTSLEKKGPSVADTVIGEGNTTVWKMCGLDKSTCLTVLFDLSSSERSNASGAAVNQQLYLQFLTSYQSPDGQLVLRVTTVTRRWVDSAVSTEELVQGFDQETAAVVMARYASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPQDDAQAVIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03036 765 Gene3D von Willebrand factor, type A domain 124 400 IPR036465 -
Trre5g03036 765 FunFam Protein transport protein SEC23 127 401 - -
Trre5g03036 765 Pfam Sec23/Sec24 helical domain 521 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Trre5g03036 765 FunFam Protein transport protein SEC23 623 727 - -
Trre5g03036 765 Gene3D - 53 112 - -
Trre5g03036 765 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Trre5g03036 765 Pfam Sec23/Sec24 trunk domain 127 391 IPR006896 GO:0006886|GO:0006888|GO:0030127
Trre5g03036 765 SUPERFAMILY vWA-like 128 392 IPR036465 -
Trre5g03036 765 Gene3D Sec23/Sec24 helical domain 518 762 - -
Trre5g03036 765 FunFam Protein transport protein SEC23 53 112 - -
Trre5g03036 765 Pfam Gelsolin repeat 633 721 IPR007123 -
Trre5g03036 765 SUPERFAMILY Helical domain of Sec23/24 521 623 IPR036175 GO:0006886|GO:0006888|GO:0030127
Trre5g03036 765 CDD Sec23_C 613 733 IPR037550 GO:0030127|GO:0090114
Trre5g03036 765 Gene3D Severin 623 727 IPR029006 -
Trre5g03036 765 Gene3D - 10 504 - -
Trre5g03036 765 Pfam Sec23/Sec24 beta-sandwich domain 402 507 IPR012990 -
Trre5g03036 765 FunFam Protein transport protein SEC23 518 639 - -
Trre5g03036 765 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 624 764 IPR036180 -
Trre5g03036 765 SUPERFAMILY beta-sandwich domain of Sec23/24 8 520 - -
Trre5g03036 765 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 764 IPR037364 -
Trre5g03036 765 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03036 Trre-Chr5 24903481 24909259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03036 K14006 - gmx:100813940 1381.7