Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03006 ATGTTGTCGTTTAGCTCTGCAGTGATTCCCCAATCTTTCTTCTCCATTTCACTTCCACTCCCTACCTTTCAATCTCATTCCCCTTCTTCACATTTTCTTAGGAAGAGTGTTAATTTAGGATGTACAAGAGAGTCACCAAGCATCAAGATACACTCTTCACTTACAGATTTTTCAGTAGATGTAGCTGTAGAAGAAAAAAAGCTACCAAAAGGAGAAACATGGTCTGTTCACAAATTTGGTGGAACATGTGTGGGAAGTTCAGTGAGAATAAATAATGTTGCAGATGTAATAATCAATGATGATTCTGAGAGAAAATTAGTGGTAGTATCTGCTATGTCAAAAGTAACAGATATGATGTATGATCTCATCCACAAAGCTCAATCTCAGGATAAGTCTTATATATCTGCACTTGATGCTGTTGCTGAGAAGCATAGTTTAACTGCACATGAATTATTTGATGGAAATGATCTTGCTACTTTCTTATCTAATTTGAATCAAGATGTTACAAATTTAAAGGCAATGCTTCAAGCTATAGATATAGCTGGTCATGCTACAGAATCCTTTACTGACTTAATTGTGGGACATGGAGAGTTGTGGTCTGCACAGATATTGTCTTATGTTGTTAAGAAGAAAGGGACTCCATGCAAATGGATGGACACAAGGGAAGTACTCGTCGTAAATCCTACTCGTGCTGATCAAGTCGATCCTGATTACTTGGAGACTGAACAAAGACTTAATGAATGGTATTCTCTTAATCCATCTAAGGTAATCATTGCTACTGGATTTATAGCAAGCACGCCTCAAAATATTCCTACTACTCTCAAGAGAGATGGAAGTGACTTCTCCGCAGCAATTTTGGGTGCTCTATTCAAGGCTCGTCAAGTTACAATTTGGACAGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGATGCTGTGATTTTGAAGACACTGTCTTATCAAGAGGCATGGGAGATGTCGTATTTTGGTGCAAATGTCTTGCATCCACGCACAATTAGTCCAGTTATTCGATATGGAATACCAATTATAATTAGGAATGTTTTCAACACCTCGGCTTCTGGAACAAAGATCTGCCATCCTTCTATTATTGAAAATGAAGATAGGAAGATATTAAGAAATTATGTCAAAGGCTTTACAACGATAGACAATTTGGCACTTGTAAATGTGGAAGGAACTGGAATGGCCGGTGTTCCAGGTACTGCAAGTACTATTTTTAGTGCAGTAAAAGAGGTTGGAGCCAATGTTATAATGATATCTCAGGCTAGTAGTGAGCATTCTGTATGTTTTGCTGTGCCTGAGAAGGAAGTAAAAGCTGTATCTGAGGTGTTGCAATCTATATTTCACAGCGCTTTGTATGCTGGGCGTCTTTCTCAGGTTGCAGTCATTCCAAATTGCAGTATTTTGGCAGCTGTTGGCCAGAAAATGGCAAGCACTCCAGGAGTTAGTGCCACCCTTTTCAATGCTTTGGCTAAGGCCAACATAAATATCCTTGCTATAGCACAAGGTTGTTCTGAGTACAATGTTACTGTTGTTCTTAAGCGAGAGGATTCTATAAAGGCTCTGCGGGCTGTCCATTCCAGATTTTATAACTCAGAAACTACCATAGCAATGGGCATAATTGGACCTGGATTAATCGGGAGCACACTACTTGATCAGCTAAGGGATCAGGCATCAACTTTGAAAGAAGAATCAAACATTGATTTGCGTGTAATGGGCATCATGAGTTCAAAGTTGATGCTCCTTGATGATTCGGGCATCGATTTAGTAAAGTGGAGAGAAATTCGAGAAGCAAAAGGTGAAGTGGCTGATATGGAAAAATTTGTTCAACATGTGCATGGAAATCATTTTATACCAAACACGGTTTTAGTGGACTGCACTGCTGATTCCGTCATAGCAAGCAATTACGATGACTGGCTGCGCAAAGGAATACATGTTATCACCCCCAATAAAAAGGCCAACTCAGGACCACTTAATGAGTATTTGAGGTTAAGAGCTCTTCAGAGGCAATCATACACACATTACTTCTATGAAGCTACTGTTGGAGCCGGTCTTCCAATTATCGGCACTTTACGAGGCCTTCTCGAAACTGGTGACAAAATATTGCAAATTGAAGGCATCTTCAGTGGGACTTTGAGTTACATCTTTAATAACTTCAAAGATGGACGGCTTTTTAGTGAGGTAGTTGCCGAAGCAAAGGAAGCAGGTTATACTGAACCAGATCCGAGGGATGATCTGTCCGGAACAGATGTTGCAAGAAAGGTGATAATTCTTGCAAGGGAATCTGGCTTGAAGCTAGAGCTTTCTGATATTCCCGTTGAAAATCTTGTGCCGGAACAATTAAGAGTTAGTGCATCAGCTCAAGAGTTTATGCAGAAATTACCAAAATTCGACCAGGAGTTATCAAAGAAACAAGAAGATGCTGATTTTGCAGGAGAAGTCTTGAGATACGTGGGAGTTGTAGACGTGATTAATCAAAAGGGGTCGGTGGAGCTTCGACGATACAAGAAGGATCATCCATTTGCACAATTATCCGGTTCGGATAACATTATTGCATTCACAACAAGAAGGTATAGATTTCAGCCTCTTATAGTTCGCGGACCAGGGGCTGGAGCACAAGTCACAGCTGGTGGAATATTCAGTGACATTTTACGACTTGCCTCATATCTTGGCGCTCCATCTTAG 2712 0.4019 MLSFSSAVIPQSFFSISLPLPTFQSHSPSSHFLRKSVNLGCTRESPSIKIHSSLTDFSVDVAVEEKKLPKGETWSVHKFGGTCVGSSVRINNVADVIINDDSERKLVVVSAMSKVTDMMYDLIHKAQSQDKSYISALDAVAEKHSLTAHELFDGNDLATFLSNLNQDVTNLKAMLQAIDIAGHATESFTDLIVGHGELWSAQILSYVVKKKGTPCKWMDTREVLVVNPTRADQVDPDYLETEQRLNEWYSLNPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAILGALFKARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTISPVIRYGIPIIIRNVFNTSASGTKICHPSIIENEDRKILRNYVKGFTTIDNLALVNVEGTGMAGVPGTASTIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVSEVLQSIFHSALYAGRLSQVAVIPNCSILAAVGQKMASTPGVSATLFNALAKANINILAIAQGCSEYNVTVVLKREDSIKALRAVHSRFYNSETTIAMGIIGPGLIGSTLLDQLRDQASTLKEESNIDLRVMGIMSSKLMLLDDSGIDLVKWREIREAKGEVADMEKFVQHVHGNHFIPNTVLVDCTADSVIASNYDDWLRKGIHVITPNKKANSGPLNEYLRLRALQRQSYTHYFYEATVGAGLPIIGTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGRLFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEQLRVSASAQEFMQKLPKFDQELSKKQEDADFAGEVLRYVGVVDVINQKGSVELRRYKKDHPFAQLSGSDNIIAFTTRRYRFQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03006 903 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 73 370 - -
Trre5g03006 903 Pfam Amino acid kinase family 75 356 IPR001048 -
Trre5g03006 903 Pfam ACT domain 403 457 IPR002912 -
Trre5g03006 903 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 543 717 IPR036291 -
Trre5g03006 903 Pfam Homoserine dehydrogenase, NAD binding domain 551 687 IPR005106 GO:0016491|GO:0050661
Trre5g03006 903 ProSitePatterns Aspartokinase signature. 76 84 IPR018042 GO:0004072|GO:0008652
Trre5g03006 903 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 382 541 - -
Trre5g03006 903 Pfam ACT domain 473 536 IPR027795 -
Trre5g03006 903 CDD ACT_AKi-HSDH-ThrA_2 475 540 - -
Trre5g03006 903 SUPERFAMILY ACT-like 384 458 IPR045865 -
Trre5g03006 903 SUPERFAMILY ACT-like 466 554 IPR045865 -
Trre5g03006 903 CDD ACT_AKi-HSDH-ThrA-like_1 394 473 - -
Trre5g03006 903 Gene3D - 546 895 - -
Trre5g03006 903 Pfam Homoserine dehydrogenase 695 893 IPR001342 GO:0006520
Trre5g03006 903 SUPERFAMILY Carbamate kinase-like 74 369 IPR036393 -
Trre5g03006 903 NCBIfam aspartate kinase 74 539 IPR001341 GO:0004072|GO:0008652
Trre5g03006 903 ProSiteProfiles ACT domain profile. 480 557 IPR002912 -
Trre5g03006 903 ProSitePatterns Homoserine dehydrogenase signature. 741 763 IPR019811 GO:0006520
Trre5g03006 903 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 695 880 - -
Trre5g03006 903 Gene3D Dihydrodipicolinate Reductase; domain 2 706 877 - -
Trre5g03006 903 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 706 877 - -
Trre5g03006 903 ProSiteProfiles ACT domain profile. 399 468 IPR002912 -
Trre5g03006 903 PANTHER - 58 903 IPR011147 GO:0004072|GO:0004412|GO:0009067
Trre5g03006 903 Gene3D - 381 542 - -
Trre5g03006 903 Gene3D - 74 369 IPR036393 -
Trre5g03006 903 CDD AAK_AK-HSDH 74 368 IPR041743 -
Trre5g03006 903 FunFam Bifunctional aspartokinase/homoserine dehydrogenase 546 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03006 Trre-Chr5 24384043 24389896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03006 K12524 - gmx:100812202 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03006 5 24384043 24389896 Trre5g03006 5 24384043 24389896 ECH