Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03004 ATGTCATCGATTCCTTTCATCTTCAGCTGCAGCGTTCTTCCTCGCACCAACTTCACCACAATCAACGTTTCCCGAACTCGTTCTTTTCGTCTCTTATGTCAATCTCAATCCAAGACAGAAAAAACGAAGATAAGAAAGTTTTCACCTTTGTTGGAAAGTTCATTGCTTTCTGATAATGGTGATGGTGATGGTGGTGTGGCTTTAGATGAGTGGAAAGCAGTTCCTGATATTTGGAAAACTTCTGCTGACAAATTTGGTGATAAAATAGCTCTCATTGATCCATATCATCATCCTCCTTCAACTATCACATACAAACAGTTGGAGGATGCAATATTGGATTTTTCCGAGGGCTTGAGAGTTATTGGAGTACGTCCCGATGAAAAGATTGCACTTTTTGCCGATAATTCATGTCGCTGGCTTGTTGCAGATCAAGGTATGATGGCGAGTGGAGCAATCAATGTTGTTAGGGGTTCAAGGTCATCAATTGAAGAACTGCTGCAAATATACAACCACTCTGAAAGTGTTGCACTAGCTGTGGATAATCCAGAAATGTTTAATCGGATTGCAAAAGCGTTTAATTTGAAGGCTTCAATGAGATTTATTATTCTGCTGTGGGGAGAAAAATCAAGCCTGGTCAATGAAGGAAACAAGGAAGTGCCAATCTTTACATTCACAGAAGTCATAAATTTGGGACAAGAGAGCCGCAGGTCATTGTTTGAGTCTCATTATGCTAGGAAGCACTATGTGTTTGAAGCAATAAAATCTGACGACATTGCTACTCTTGTATACACAAGTGGAACTACCGGAAATCCAAAAGGTGTTATGCTAACCCATCAGAATCTTTTGCATCAGATTAAATTTTATTCGGACATTGTACCTGCTGAAGTTGGGGATAGATTTCTAAGTATGCTGCCTCCTTGGCATGCATATGAAAGAGCTTGTGAGTATTTCATTTTCTCACGCGGTGTTGACCAAGTATATACAACTGTGAGAAACTTGAAGGATGATTTGGGACGTTACCAGCCACATTACTTGATTTCTGTTCCTTTAGTTTATGAGTCTTTGTACATTGGGATCCAGAGGCAGATTTCTACAAGCTCCCTTGTTAGAAAGATTGTTGCACTGACATTCATAAGGGTCAGCTTAGGGTACATGGAATGCAAGCGAATTTATGAGGGTAAATGTTTGACAAAGAATCAGAAGTCGCCTTCCTATCTCTATGCAATGTTGGATTGGCTATGGGCAAGAACTATTGCCATAATATTATTTCCGATTCATATGCTGGCAAAGAAACTTGTCTACAGTAAAATCCATTCAGCTATTGGAATTTCAAAGGCTGGAATAAGTGGTGGTGGTAGCTTACCTTCTCACATCGACAAGTTTTTTGAGGCTATTGGTGTGAAATTGCAGAATGGATATGGTTTAACAGAAACTTCACCAGTTATTGCTGCTCGACAACTTAGTTGCAATGTTATTGGATCTGTCGGGCATCCACTTAAGCATACAGAATTCAAAGTTGTAGATTCTGAAACCGGTGAAGTTCTTCCACCTGGCTATAAGGGGATTTTGAAAGTCAAGGGCCCACAATTGATGAAGGGATACTACAAGAATCCTTCTGCTACGAATCAGGTCATAGATAGGGATGGATGGCTGGATACTGGTGACATAGGTTGGATTTTTCCATACCATTCAATTGGGCGGAGTCGTAATTCTGGTGGTGTGATTGTTGTTGAAGGCCGTACTAAAGACACCATTGTGCTTTCATCAGGTGAAAATGTTGAACCGGGAGAACTTGAAGAAGCTGCAATGAGAAGTAGCCTCATACAACAAATTGTTGTCGTTGGCCAGGATAAGCGACGTCTAGGAGCTGTAGTTGTTCCTAACAAAGAAGAAGTCTTAAAGGCAGCGAGGGAATTGTCGATTATAGATTCCAATAGTTCAAATGTCAGTCAGGAAAAAGTGACCAGTTTAATATATAATGAATTAAAGACCTGGACGTCAGAGTTTCAATTTCAAATCGGGCCAATCCTTCTAGTAAATGATCCCTTCACGGTTGATAATGAGCTAATGACACCCACAATGAAAGTTCGAAGGGATAGAGTTATGGCTCAATACAGGGACCAAATAGAGAATCTTTACAAGTAA 2145 0.4023 MSSIPFIFSCSVLPRTNFTTINVSRTRSFRLLCQSQSKTEKTKIRKFSPLLESSLLSDNGDGDGGVALDEWKAVPDIWKTSADKFGDKIALIDPYHHPPSTITYKQLEDAILDFSEGLRVIGVRPDEKIALFADNSCRWLVADQGMMASGAINVVRGSRSSIEELLQIYNHSESVALAVDNPEMFNRIAKAFNLKASMRFIILLWGEKSSLVNEGNKEVPIFTFTEVINLGQESRRSLFESHYARKHYVFEAIKSDDIATLVYTSGTTGNPKGVMLTHQNLLHQIKFYSDIVPAEVGDRFLSMLPPWHAYERACEYFIFSRGVDQVYTTVRNLKDDLGRYQPHYLISVPLVYESLYIGIQRQISTSSLVRKIVALTFIRVSLGYMECKRIYEGKCLTKNQKSPSYLYAMLDWLWARTIAIILFPIHMLAKKLVYSKIHSAIGISKAGISGGGSLPSHIDKFFEAIGVKLQNGYGLTETSPVIAARQLSCNVIGSVGHPLKHTEFKVVDSETGEVLPPGYKGILKVKGPQLMKGYYKNPSATNQVIDRDGWLDTGDIGWIFPYHSIGRSRNSGGVIVVEGRTKDTIVLSSGENVEPGELEEAAMRSSLIQQIVVVGQDKRRLGAVVVPNKEEVLKAARELSIIDSNSSNVSQEKVTSLIYNELKTWTSEFQFQIGPILLVNDPFTVDNELMTPTMKVRRDRVMAQYRDQIENLYK 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03004 714 ProSitePatterns Putative AMP-binding domain signature. 261 272 IPR020845 -
Trre5g03004 714 Gene3D - 582 711 IPR045851 -
Trre5g03004 714 CDD LC_FACS_like 98 701 - -
Trre5g03004 714 SUPERFAMILY Acetyl-CoA synthetase-like 73 713 - -
Trre5g03004 714 PANTHER ACYL-ACTIVATING ENZYME 16, CHLOROPLASTIC-RELATED 28 714 - -
Trre5g03004 714 Gene3D Luciferase; Domain 3 489 559 - -
Trre5g03004 714 Gene3D - 69 380 IPR042099 -
Trre5g03004 714 Pfam AMP-binding enzyme 79 587 IPR000873 -
Trre5g03004 714 Gene3D - 445 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03004 Trre-Chr5 24366216 24374098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03004 27 714 Acyl Lipid Metabolism Gene Families AT3G23790 66.763 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03004 K01897 - gmx:100782583 1142.49