Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02989 ATGGCGTTGCTTGTTGAAACAACCACAAGCGGCCGTGAATACAAAGTCAAGGACATGTCCCAGGCCGACTTCGGCCGTCTCGAAATCGAGCTCGCCGAAGTCGAAATGCCTGGTCTCATGTCCTCCCGCAAAGAATTCGGCCCTTCTCAACCCTTCAAAGGCGCCAAAATCACCGGTTCCCTTCACATGACTATCCAAACCGCCGTCCTTATCGAAACCCTAACCGCTCTCGGCGCAGAAGTCCGCTGGTGTTCCTGCAACATTTTCTCCACCCAAGACCACGCCGCTGCCGCCATCGCTCGTGACAGCGCCGCTGTTTTCGCCTGGAAAGGTGAAACTCTCCAGGAATATTGGTGGTGCTCTGAACGTGCACTCGATTGGGGTCCTTCCGGTGGACCAGATCTGATCGTTGATGATGGTGGTGATGTCACTCTTTTGATCCATGAAGGTCTTAAAGCTGAACAAGCTTTTGAGAAGAATGGTACTTTGCCTGATCCTTCTTCTACTGATAATGCTGAGATGCAGATTGTTCTTACCATTATCAGAGATGGTTTGAAAACTGATCCTAAACGTTACCACAAGATGAAGGATAGAATTGTTGGTGTTTCTGAAGAAACTACCACTGGTGTTAAGAGGCTTTATCAGATGCAGGCTAATGGAACACTTTTGTTCCCTGCTATCAATGTCAATGACTCTGTTACCAAGAGCAAGTTTGACAACTTGTATGGTTGCCGTCACTCACTCCCCGATGGACTGATGAGGGCTACTGATGTCATGATTGCCGGTAAGGTTGCTGTTGTATGTGGTTATGGAGATGTTGGCAAGGGCTGTGCTGCTGCCTTGAAACAGGGTGGTGCTCGTGTGGTCGTGACTGAGATCGATCCAATCTGTGCACTTCAAGCTCTCATGGAAGGTCTTCAAGTTCTAACTCTTGAGGATGTTGTCTCCGAGGCTGACATTTTCGTTACCACAACTGGTAACAAAGACATTATCATGGTCAGTGACATGAAGAAAATGAAGAACAATGCCATTGTCTGCAACATTGGTCACTTCGACAATGAAATCGACATGCATGGTCTTGAGACATACCCTGGTGTGAAGCGCATCACAATTAAGCCACAAACTGACAGATGGGTTTTCCCCGAAACCAACACTGGCATCATCGTCTTGGCCGAAGGTCGTTTAATGAACTTGGGATGTGCTACTGGACACCCCAGTTTCGTCATGTCATGCTCCTTCACCAACCAAGTCATTGCTCAGATTGAGTTGTGGAAAGAGAAGACTTCTGGCAAATATGAAAAGAAGGTCTATGTTTTGCCTAAGCACCTCGATGAGAAGGTTGCCGCACTTCATCTCGGCCAGCTTGGAGCTAAGCTCACCAAGCTTTCCAAAGATCAGGCAGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTACTGA 1458 0.4801 MALLVETTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMSSRKEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCSERALDWGPSGGPDLIVDDGGDVTLLIHEGLKAEQAFEKNGTLPDPSSTDNAEMQIVLTIIRDGLKTDPKRYHKMKDRIVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQGGARVVVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVSDMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQIELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02989 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 379 485 - -
Trre5g02989 485 Gene3D - 243 404 - -
Trre5g02989 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Trre5g02989 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Trre5g02989 485 PIRSF SAHH 2 485 IPR000043 -
Trre5g02989 485 Gene3D - 15 485 IPR042172 -
Trre5g02989 485 FunFam Adenosylhomocysteinase 242 403 - -
Trre5g02989 485 SMART AdoHcyase_2 13 484 IPR000043 -
Trre5g02989 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Trre5g02989 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Trre5g02989 485 CDD SAHH 23 473 IPR000043 -
Trre5g02989 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Trre5g02989 485 PANTHER ADENOSYLHOMOCYSTEINASE 7 485 IPR000043 -
Trre5g02989 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Trre5g02989 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Trre5g02989 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Trre5g02989 485 NCBIfam adenosylhomocysteinase 14 477 IPR000043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02989 Trre-Chr5 24203746 24206027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02989 K01251 - cpap:110807929 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02989 5 24203746 24206027 Trre5g02989 5 24203746 24206027 ECH