Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02988 ATGGATCCAGTTAGCGAATGGGGAAACACACCGTTAGTAACCGTCGACCCAGAAATCCACGACCTAATAGAAAAAGAGAAACGCCGTCAATGCCGTGGAATCGAACTCATAGCCTCAGAAAATTTCACCTCCTTCGCAGTCATCGAAGCACTAGGAAGTGCCCTCACCAACAAATACTCCGAAGGTCTTCCCGGTAACCGTTACTACGGCGGTAATGAATTCATCGATCAGATCGAAAACCTCTGCCGTTCACGTGCTCTAACCGCTTTCCATCTCGACGCCGCAACTTGGGGAGTTAATGTTCAGCCTTACTCCGGTTCTCCGGCTAACTTCGCCGCTTACACGGCGGTTCTTCAGCCTCATGATCGGATTATGGGACTGGATCTACCTTCCGGTGGACATTTGACTCATGGTTACTATACTTCCGGTGGAAAGAAAATTTCTGCTACTTCGATTTACTTTGAGAGTTTGCCTTATAAGGTGAATCAGAGTACTGGATTTATTGATTATGATAGGTTGGAAGAGAAAGCTTTGGATTTTAGACCTAAATTGATTATTTGTGGTGGAAGTGCTTATCCTAGGGATTGGGATTATGCTAGATTTAGACAAGTTGCTGATAAGTGTGGTGCACTTTTGCTTTGTGATATGGCTCATATTAGTGGCCTTGTTGCTGCTCAGGAAGCTAACAATCCCTTCGAGTACTGTGACATTGTCACAACAACAACCCATAAGAGTTTAAGGGGTCCTAGAGCTGGTATGATCTTCTACCGGAAGGGACCTAAGCCACCAAAAAAGGGTCAGCCCGAGAATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCTGTTTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATTGGCGCCCTTGCTGTTGCTTTGAAACAGGCTGCGACGCCTGCATTCAAAGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCACTCGGAAATTACTTGATGAGCAAGGGATACAGTCTTGTCACTGGAGGAACTGAAAACCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGTTTGACCGGAAATAAGGTGGAAAAACTTTGTGATCTCTGTAACATTACTGTGAACAAGAATGCTGTTTTTGGCGATAGCAGTGCCTTGGCCCCTGGTGGAGTAAGAATTGGTGCCCCAGCTATGACTTCTAGGGGATTGGTTGAGAAGGACTTTGAGCAGATTGGAGAGTTCCTTCACCGTGCAGTAACTCTTACACTAGATATTCAAAAGGAATATGGCAAACTTTTGAAGGACTTCAACAAGGGATTGGTGAACAACAAAGCTCTTGAAGAGCTCAAAGCTGATGTTGAGAAGTTTTCAGCCTCATTCGATATGCCTGGTTTCCTAGTATCTGAGTTGAAGTACAAGGATTAG 1416 0.4527 MDPVSEWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGLPGNRYYGGNEFIDQIENLCRSRALTAFHLDAATWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNQSTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAATPAFKAYAKQVKANAVALGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLDIQKEYGKLLKDFNKGLVNNKALEELKADVEKFSASFDMPGFLVSELKYKD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02988 471 SUPERFAMILY PLP-dependent transferases 4 463 IPR015424 -
Trre5g02988 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 9 463 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre5g02988 471 FunFam Serine hydroxymethyltransferase 41 316 - -
Trre5g02988 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Trre5g02988 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Trre5g02988 471 Gene3D - 41 316 IPR015421 GO:0003824
Trre5g02988 471 CDD SHMT 15 453 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre5g02988 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre5g02988 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Trre5g02988 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Trre5g02988 471 FunFam Serine hydroxymethyltransferase 304 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02988 Trre-Chr5 24193577 24196244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02988 K00600 - gmx:100815417 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02988 5 24193577 24196244 Trre5g02988 5 24193577 24196244 ECH