Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02987 ATGAGTACCGTTGACAAGATGCTGATCAAAGGCATCCGTAGTTTCGACCCTGAAAACAAGAACGTCATCACCTTCTTCAAACCCTTAACCCTAATCGTCGGTCCCAACGGTGCCGGAAAAACCACTATTATTGAATGCTTGAAGCTTTCATGCACCGGTGAATTGCCACCAAATGCTAGGTCTGGCCACAGCTTCATTCATGATCCTAAGGTTTCCGGTGAAACGGAAACCAAGGGACAGATTAAGCTCCGGTTCAAAACCGCTGCTGGTAGAGACGTGGTTTGCATAAGGTCGTTTCAACTCACACAAAAAGCATCTAAGATGGAATACAAAGCAATTGAAAGTGTGCTTCAAACTATAAATCCTCATTCCAGCGAGAAAGTTTGCCTTAGCTATAGATGTGCTGACATGGATAGAGAGATTCCTGCGTTGATGGGAGTTTCAAAGGCCATTTTGGAAAATGTTATATTCGTTCATCAAGATGAAGCTAATTGGCCGCTTCAGGATCCTTCCACGTTGAAAAAGAAGTTTGACGATATCTTTTCGGCAACTCGATACACAAAGGCACTGGAGGTTATAAAGAAACTTCACAAGGATCAAGCTCAAGAGATAAAGACTTACAAGCTGAAACTGGAAAATCTTCAAACGTTGAAAGATGCAGCTTATACGCTTCGGGAAAGTATCACACATGATCAAGAGAAAACAGAATCTCTAAAAGATCAGATACAGCAGTTGGGTGGAAGCATTAAAGATTTGGACACTAAAATTGATCATGCGGAAAAAACATTGAAACACTTACGGAACCTAAAGGAGCAAATAAATGCTAAAACTACAGAACGAAGCACTCTATTTAAGGAACAACAGGATAAACATGCAGCTCTTGATGAGGAATATGAAGAACCGGATGAAGAGTTGATGGAAATGAAGACCAACTTTGATAATAAGATTGCAATTGCTGACTCACATATAGGCAAATTGGAAAGAGAGAAGGAGGACATTAGCACAAAAAGTAAACGCCTTAAGAAGACAGTCGATGAGTCCATCTGGGATATCAGCAAGCTACAAACTGAAATAGAAGCTCACATGTCTTTGAAGAAGAAACGAGATACTCACATTCAAAATATTTTTGCCAGTTATAACTTAGGTTCTCTTCCGAAGCCACCCTTCAGTGCTGAGGATGCTTTGAACCTCACCAATCGTGTAAAATCAAGGTTGGGGGATCTTGAGAAGGATCTTGAGGATAAAAAGAAAGCAAATAACATTGAACTCCAGATGGCATGGGATTGCTACTTGAGTGCAAATGAAAGTTGTCAAAATACTGAGGCTAAAATACAAACTAAGAGAGAGATCAAGGTTGATATTATAAAGCGCATTGAAGATAAGAAAAATAAGCTTGATTCTTTCGAACTTCAATTATCTAATATAAATGTTTCTCAGTTAGACGAGAGAGAAAGAGACTTGCAAATTCGGCTGGAGAGGATGATCAAGCAGCACGAGGAAAGCGAATTTGAACAAAAGAAAAGTCAAAATGAAATTAATGTCCATATTGTGGAGCAAAAGATTAAAGCTGTCAATCGAGAGTTGTTTACCATGTCTAGTGATTCAAAGGACAGAGAGAAACTATCTTATTTGAAGGGAAAATTGGAGACGGAGAAGAAGAAGCATAAAAAGATAATTGATGACCAGAAAGATAAAATAAGAAGAGTGCTAAAAGGGAGAATTCCTAGTGACAAGGACTTGAAGAAGGAAATCACACAATCATCAAGGACTGTTGTAGCTGAATATGATGAGCTGAATGCTAACTATCGGGAAGTTGACAAGGAAGTAAATGTTTTGCAGATGAAAATACAAGAAGTAGACAATAGTCTTTCTAAACACCGCAAGGATATGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATTTTCTAGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAGAGAGATGTACAAAAAAGCAAATATAACATTGCCGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTCATCATTTTTGCCCTTGCTGTGAGCGTTCTTTCTCGGCAGAAGAAGAAGACAGTTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCGGCTGAACATATGAAAGCGCTCGCTGTGGAGTCCTCCAGTGCAGACTCTGATTATCAGCAGTTGGACAAGCTTCGTATGTGGTATGAAGAATATGTTAAACTTGGCAAGGAGACAATCCCTAATGCTGAAAAGGAACTCCAGCAAGCGAAGGAGGACCTGGATCACAAATCCCAGGAACTTGATGATGTTTTAGGTAGTTTAGCTCAAGTGAAGACTGAGAAGGATTTGGTTGACACAGTGATGCAGCATGTTGAAAATGCTGATAGAATTTTCCAAGAAATTCAAAATTTGCAATCGGAGGTTGAGGATTTAGAAAGTAGGCTTGATTGTGGAGGACCAGGTGTAAGGACTCTAGAAGAAATTCAATCCGAGCTAACTGCATTGCAGGGAACAAAGGACAATTTGCATACCGAGATGAAGAATATGATGGAAAAGCACAACGATAGGCAGAAGGATATAACAATATTGACGACACGGTTGAACAATGCAAGGAATGATAAAAATAATGCAGCTATCAAATTGCAAGAAGTTAAAAGATTAGAAGAAGATTTAGAACACTTAACTGAAGAAATGACCCAAGTTGATCTTGATGAGAAGAGTCTGCTTGAAGCTGTTGGACCTTTATCCAAGCGCAAAGATAAATTACATGCTGATTATAATGAACTAAAAATTAGACTTGGCAGCGAGTATGAGAATCTGGCTGAAAAAAAGAGAATGTATCAGCAAGCAGCTGAAGAAGTTTTTAGCATGACTTATACGATCAAAGAGTACTCTGAATTAATGAAAACAGACAGGTTGAGGGAGCTGCAGGAAAAGAAATCTCTATCAGAATCTCAACTGCAAAGTTGTGAAACCAGGATGCAGAACATTATAGAAGAACTGGAGAAAAAGAAAGAATTAATGAGAAATGCTGATCCGATTAGAAGAAGACTTGACGACAACATAAATTACAGAAAAACAAAGGCTAAAGTTGATAAGCTATTAAGTGAAATTGAAATACTTGAAGAGAGTATGTTGAAGGTTGGTGTATTTGACACAATTGAAAAGGAACTCCAGAAATTATCCAAGGAGAGGGAGAGGCTTCTTGAGGAGTCAAACAGGTGCAAAGGAACAATGGATGTTTACCAGAGCAATATTTCCAAAAATAAGATTGATCTTAAGCAGGCCCAATACAAGGACATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAGATGGCAAACAAGGACCTGGACAGATACTACAATGCGCTTGACAAAGCACTGATGCGTTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAGTTGTGGCAACAGACTTATAGAGGACAGGATATTGACTGCATTAGTATTCATTCTGATTCTGAAGGTGGTGGTACCCGTTCCTACAGTTATAAGGTTCTCATGCAGACTGGTGATGCTGAATTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTACTGGCGTCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGCCTCAATTGTGGAATTCTTGCATTGGATGAACCAACAACAAATTTGGACGGACCAAATGCTGAAAGTCTAGCTGCTGCTATCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTGATTGTAATTACTCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGTCAGCATGCAGAGAGATATTATCGAGTCGCAAAAGATGATCATCAGCACAGCATAATCGAATCACAGGAGATATTTGACTGA 3951 0.3921 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVSGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTINPHSSEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRESITHDQEKTESLKDQIQQLGGSIKDLDTKIDHAEKTLKHLRNLKEQINAKTTERSTLFKEQQDKHAALDEEYEEPDEELMEMKTNFDNKIAIADSHIGKLEREKEDISTKSKRLKKTVDESIWDISKLQTEIEAHMSLKKKRDTHIQNIFASYNLGSLPKPPFSAEDALNLTNRVKSRLGDLEKDLEDKKKANNIELQMAWDCYLSANESCQNTEAKIQTKREIKVDIIKRIEDKKNKLDSFELQLSNINVSQLDERERDLQIRLERMIKQHEESEFEQKKSQNEINVHIVEQKIKAVNRELFTMSSDSKDREKLSYLKGKLETEKKKHKKIIDDQKDKIRRVLKGRIPSDKDLKKEITQSSRTVVAEYDELNANYREVDKEVNVLQMKIQEVDNSLSKHRKDMESRKRFIESKLQSLDQQFSRIDSYLKVLESAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSAEEEDSFVKKQRVKAASSAEHMKALAVESSSADSDYQQLDKLRMWYEEYVKLGKETIPNAEKELQQAKEDLDHKSQELDDVLGSLAQVKTEKDLVDTVMQHVENADRIFQEIQNLQSEVEDLESRLDCGGPGVRTLEEIQSELTALQGTKDNLHTEMKNMMEKHNDRQKDITILTTRLNNARNDKNNAAIKLQEVKRLEEDLEHLTEEMTQVDLDEKSLLEAVGPLSKRKDKLHADYNELKIRLGSEYENLAEKKRMYQQAAEEVFSMTYTIKEYSELMKTDRLRELQEKKSLSESQLQSCETRMQNIIEELEKKKELMRNADPIRRRLDDNINYRKTKAKVDKLLSEIEILEESMLKVGVFDTIEKELQKLSKERERLLEESNRCKGTMDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAILRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02987 1316 Coils Coil 1038 1058 - -
Trre5g02987 1316 FunFam DNA repair protein RAD50 3 300 - -
Trre5g02987 1316 NCBIfam rad50 3 1310 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Trre5g02987 1316 Gene3D - 4 305 IPR027417 -
Trre5g02987 1316 Coils Coil 545 565 - -
Trre5g02987 1316 Gene3D - 1035 1315 IPR027417 -
Trre5g02987 1316 Coils Coil 477 497 - -
Trre5g02987 1316 Coils Coil 627 647 - -
Trre5g02987 1316 Pfam AAA domain 7 230 IPR038729 GO:0006302|GO:0016887
Trre5g02987 1316 Gene3D - 811 984 - -
Trre5g02987 1316 Coils Coil 249 286 - -
Trre5g02987 1316 Coils Coil 753 787 - -
Trre5g02987 1316 Coils Coil 197 217 - -
Trre5g02987 1316 Coils Coil 595 615 - -
Trre5g02987 1316 Coils Coil 881 918 - -
Trre5g02987 1316 PANTHER RAD50 1 1314 - -
Trre5g02987 1316 Coils Coil 1065 1092 - -
Trre5g02987 1316 Coils Coil 987 1025 - -
Trre5g02987 1316 FunFam Os02g0497500 protein 1118 1315 - -
Trre5g02987 1316 Coils Coil 323 343 - -
Trre5g02987 1316 Coils Coil 839 866 - -
Trre5g02987 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 280 IPR027417 -
Trre5g02987 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Trre5g02987 1316 Coils Coil 801 828 - -
Trre5g02987 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02987 Trre-Chr5 24161028 24183283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02987 K10866 - gmx:100818545 1899.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02987 5 24161028 24183283 Trre5g02987 5 24161028 24183283 ECH