Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02982 ATGAATTTCTTGAAAGGTCTCATTTGCCAGGCTGCCTCCCACTCCAAAGGTCATATGTTTTCATCTATACAGGAATTCTCTATTATTAAGTACTTTGGCATTGACTGTCATCCCCCTCCTCCTCCATCCATTAAGGAGGGCTCAACCTCAAAATCAGCTCTCACAAACACAGAAATCCACACATTTAGAGCTTTTTCTCTTCTCAAAATGGCTTCTCCACCCGACACAAGCAAAACCATAAAACTTGAACGTTACAATAGTTACATCAGAAAAGTTAACAGCACAAAACTCCTTAACGCTTCTTCAAAACTTCTCTTCCGTGCCACACTCTTAATCGCTCTCGTTCTCGTTTTCTTCTTCACTTTCAATTATCCACCACTCTCCGACACCACCAACCACCACTTCCACACTCATTCTCACTTCCTCACTTCCGCATTCGGCGGCGGCGGAGCATGGGAACGTCAAGTCCGTCACTCCGCCACACCTCGCCGTCCCAACGGTTTCACTGTACTAGTCACCGGCGCAGCCGGTTTCGTCGGTTCTCACTGTTCCCTCGCTCTTAAAAAACGCGGCGACGGTGTTCTAGGTCTCGATAATTTCAACAACTATTACGACCCGTCGTTGAAGCGTGCACGACAAGATCTACTAACTCAGCATCAAATCTTCATCGTCGAAGGTGACCTAAACGATGGCCCGTTGTTATCGAAACTATTCGATGTAGTTCCGATCACTCACATCCTTCATCTCGCAGCACAAGCCGGAGTTCGTTACGCAATGCAAAATCCACAATCCTACATCAAATCAAACATTGCAGGTTTCGTGAACCTTCTTGAAGTTTCCAAAGCCGCGAATCCTCAACCGTCGATTGTTTGGGCTTCATCAAGTTCAGTTTACGGTCTCAACACAGAGAATCCATTCTCAGAACTTCACCGAACAGATCAACCGGCGAGTCTCTACGCCGCAACTAAAAAAGCCGGCGAAGAAATCGCGCATACTTACAATCACATCTACGGTCTCTCCCTCACCGGACTCCGATTCTTCACTGTCTACGGTCCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACAAAAGATATCCTCCACGGAAAAACGATCGATGTATATCAAACACAAGACGGAAAAGAAGTGGCGCGTGATTTCACATACATCGACGATATCGTGAAAGGATGCATCGGAGCTTTAGATACGGCGGAGAAAAGTACAGGAAGTGGCGGAAAGAAAAAAGGACCGGCGCAATTGAGAATTTACAATCTCGGTAACACGTCGCCGGTGCCGGTGGGGAAACTGGTTTCAATTCTGGAAAATCTTCTAACAACGAAAGCGAAGAAACACGTCATCAAGATGCCACGAAACGGTGACGTACCGTATACGCATGCGAATGTTACATTGGCTAATAGAGATTTCGGGTATAAACCTGTAACGGATCTTTCAACGGGTTTGAGAAAATTCGTGAAATGGTACGTTCGGTATTATGGAATTCAGCCAAGGTTAAAAAAGGAAAATCGTATAGATAATGAACAACCCGATGATTCCGCTTGA 1563 0.4575 MNFLKGLICQAASHSKGHMFSSIQEFSIIKYFGIDCHPPPPPSIKEGSTSKSALTNTEIHTFRAFSLLKMASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSDTTNHHFHTHSHFLTSAFGGGGAWERQVRHSATPRRPNGFTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNNYYDPSLKRARQDLLTQHQIFIVEGDLNDGPLLSKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKAANPQPSIVWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKTIDVYQTQDGKEVARDFTYIDDIVKGCIGALDTAEKSTGSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILENLLTTKAKKHVIKMPRNGDVPYTHANVTLANRDFGYKPVTDLSTGLRKFVKWYVRYYGIQPRLKKENRIDNEQPDDSA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02982 520 PRINTS Nucleotide sugar epimerase signature 386 401 - -
Trre5g02982 520 PRINTS Nucleotide sugar epimerase signature 196 212 - -
Trre5g02982 520 PRINTS Nucleotide sugar epimerase signature 461 478 - -
Trre5g02982 520 PRINTS Nucleotide sugar epimerase signature 421 436 - -
Trre5g02982 520 Gene3D - 171 482 - -
Trre5g02982 520 FunFam UDP-glucuronate 4-epimerase 3 169 500 - -
Trre5g02982 520 Pfam NAD dependent epimerase/dehydratase family 170 408 IPR001509 -
Trre5g02982 520 Gene3D - 347 495 - -
Trre5g02982 520 PANTHER EPIMERASE-RELATED 152 501 - -
Trre5g02982 520 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 501 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02982 Trre-Chr5 24036171 24043385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02982 68 520 Miscellaneous Gene Families AT3G23820 79.310 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02982 K08679 - zju:107422361 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02982 5 24036171 24043385 Trre5g02982 5 24036171 24043385 ECH