Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02963 ATGGCCAAGAAACGTGTCCCCGATTGGCTCAACAGTCCTCTCTGGTCTTCCCCCTCCGAACAACACCGCTTCTCCTCCGTCGTTCCTGACCCACCGGAACCTCCTTCTCCACCTCCTCTCACCATCAAACAAGATCCTCCATCAATTCAACATTCCCGAACCAATCACAATCACAATAACAATCACAATGCCATTGTCACTTCTTCTCATTCTTCTTCTTCCTCCTCCGCTTCTACTTCCTCCGCCGATGAAAATTCTCACTCCCGTCAAGCTCAGTGTCAGGCCAATTTGTTAGCAGAGTTATCTAGGAAGGTTATTGATATGCGGGAATTGAGAAGAATCGCATCTCAAGGGATACCTGATGTTTCTGGTTTACGTTCTACTGTCTGGAAGATTTTGCTAGGGTATCTTCCACCCGATCGTGGACTCTGGTCCTCTGAATTAGCAAAGAAGAGATCCCAATATAAACGATTCAAACAAGAGATTCTCATCAATCCTTCAGAAATCACGAGGAGGATGTTCAGCTCTGGAAATTATGATGCTGATGATGTTAAATGTGAGACCAGGGGCATGCTTTCTAGATCACAAATCACTCATGGGGAACATCCTTTGAGTCTTGGGAAGACCAGTATATGGAATCAGTTTTTCCAGGATACCGATATCATAGAACAGATTGACCGTGATGTAAAGCGCACTCATCCAGATATGCCTTTCTTCTGTGGTGATTCTCAATTGGCAAAATCTAATCAGGAGGCTTTAAAGAACATATTAATTATTTTTGCAAAGTTGAACCCAGGTATTAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTTTATTCTATGTGTTCAAAAATGATCCTGACGAGGAAAACGCAGCCTTTTCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGATTCCGAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATTCGCTCAACTATAGCAAGATTGTCTCAGCTTTTGAAAGAACATGATGAAGAACTATGGCGTCATCTTGAGGTCACGACCAAAGTCAATCCCCAATTTTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAGTTCAGTTTTGCTGACAGCCTTCGTATTTGGGACACCCTTATAGGTGATCCTGATGGTCCACAGGAGACACTTCTCAGGGTATGCTGTGCAATGCTAATTCTCGTCCGTAGGCGCCTCTTGGCGGGTGATTTCACTTCAAATCTTAAGTTGCTGCAAAGTTATCCTTCTACAAACATTAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGTACAGCCAGTCTAA 1338 0.4275 MAKKRVPDWLNSPLWSSPSEQHRFSSVVPDPPEPPSPPPLTIKQDPPSIQHSRTNHNHNNNHNAIVTSSHSSSSSSASTSSADENSHSRQAQCQANLLAELSRKVIDMRELRRIASQGIPDVSGLRSTVWKILLGYLPPDRGLWSSELAKKRSQYKRFKQEILINPSEITRRMFSSGNYDADDVKCETRGMLSRSQITHGEHPLSLGKTSIWNQFFQDTDIIEQIDRDVKRTHPDMPFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFSEADTFFCFVELLSGFRDNFCQQLDNSIVGIRSTIARLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFSFADSLRIWDTLIGDPDGPQETLLRVCCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQPV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02963 445 SMART tbc_4 115 414 IPR000195 -
Trre5g02963 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 347 IPR035969 -
Trre5g02963 445 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 207 316 - -
Trre5g02963 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 325 442 IPR035969 -
Trre5g02963 445 MobiDBLite consensus disorder prediction 45 91 - -
Trre5g02963 445 Pfam Rab-GTPase-TBC domain 218 409 IPR000195 -
Trre5g02963 445 MobiDBLite consensus disorder prediction 1 91 - -
Trre5g02963 445 FunFam TBC1 domain family member 13 205 316 - -
Trre5g02963 445 ProSiteProfiles TBC/rab GAP domain profile. 120 388 IPR000195 -
Trre5g02963 445 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 78 423 - -
Trre5g02963 445 Gene3D - 324 444 - -
Trre5g02963 445 Gene3D - 89 143 - -
Trre5g02963 445 FunFam TBC1 domain family member 13 323 444 - -
Trre5g02963 445 MobiDBLite consensus disorder prediction 28 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02963 Trre-Chr5 23859707 23864566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02963 K24796 - gmx:100778830 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02963 5 23859707 23864566 Trre5g02963 5 23859707 23864566 ECH