Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02952 ATGACTGCAAAGTTTGATTGGACATCTGCTTCCGAACCTCACAAGATGTCCGGAGCTACTTCCACAACAACACCTTCTAGTAGCCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTCATCCCCAAAAACAAGTTATTGGGATCGTTGGTCCCCATTTTGCGAGGGGCTAAAAAAGATGGGGTCACTGGAGTAATCAATGAAGAAAGTCCAAAACAAATTGAGAGGAAATCAAGATGGGGGCCTGATCCGACACAGGATGCATCTGTCAAGAGGGCAAAGGTTTTGGCTCTGCAGATTCGAGTGGACCAAATTTCAAAGCAGTTGGAATCAGAAAATCCAGAGGTTGGGGACGCTCAAAACTCACCATTGGTGGATGAGAACCCCGATGAAAGCAAGTCTGGCTCTCAAACTAATAGCAAGAAGTCAGAAATGCTCGAACTTGAAAAACGGGAAGCAATAGGTGAAATACTAAAATTGGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCGTTGTTAAAAGAAGACAGTCTTCCTTTGCCTGTTCAAGAATATCCTGGGTACAAATTTGTTAGTCTAATATATGGGCCTGAAGGTGATAATCAAAAGCGACTAGAGAAGGAAACCGGCACCAAGATAAAAATTCATGGAACCAAAGCAGACACAGAGGAGAAAGGAGAAATTAAACCAGGTACTGATGTCCAGTGCAGTTACAAAGAGATGCACGTTAAAATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAGTTTCCTCTGTTACTGGGAATTCGGCTGCTGATTCCACACCTTCTGTATCTGTTTCTGGTGACAACACTAATGTTCCAAATCAAAACCCTCATGCAATTTCTCTATCTCAGGAAAACCAGGCTGTGTTTCAACCAGCAGCCAATACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCAGCCGTTCGATCTCATACCCCTTTATTTGCTTCTTCTGGCAGCATAGTGCCTCCAAATCCACCGCACCTTGCTAGAACTCCCCATTTTCCACCACAAACAATGAGCCCTTCAAATTTGATTTCAGCTTTTGGTGCTCAACCTGCTCCTGTTGCTGGGTTCCACCAGATTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCAACACAAATCTTTCAGCATTCACAATGGACTCAAACAACTCCTTTTGGTCATGTTGGGCCACCAAGAAATCCTTCTGCAATACCTGCGCAAAATTTGTCAGCGCCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTCAGCCAAAGCCAACCAACACCAACAGGACAACTCCAGACATCAGCGTCTTCAATGCCTCAACCTATGTCTGGTATATCACCATCACCAATAGCTAACCAGCCACTAACCCCTCACGGCGTATCTTCTGGACTGAGTGGAGGACCCTTCAATGTTAAAATATCTGTAGGTCTCAGCAATATGGGGTCTATGGCTCCACAACCAGATGTACCCCAGCCAAATATGTCGGTGATGCCACGACCTGGTAGCATCCATCCACATCATGCAGGAATGTCGCCTAGACCATCATCATCTGTGGGACCAATACCAGGAACTGTTCATTCAACTGGAAACCGTTTATCAGGACCTGTTTCATTTCCTTCTCCAGGAATATCCTCTTCACTTCAATTAGCTCAGCAGTCGGGAATGCCTAATTCTGCCTCTCATTACACCCACGTAAAACCACTGGCCTCCATGCTTTCAAATTCTGGAAATTTTACTTTTCAAGGACAGCGGCCCAATGCAGACTACTATCAAGGGGTTCCCAGACCAAACAATCAAGCTACTACTCAGGGTGGTTCACAAGAGCCACCTTCTGGTACACGGCCGCCACCATTTGGATTTTCTGTACCCGATCAGCATCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCTGGTGGATCCAACTCAAGCCTATCTTTCTGCTGCTCCTTTTGGGGGAAGACCGGGTCCTGTCTCTATTCCACCGAGACACACTGCTTTTCCCTATGCTGGTCAACCCTCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTTCCCCTCAAATGCCAAACTTGCCCAGTCCTGGTGCTCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAACATGGCCAGATATCCCAATGCCTCTGAATCAGAAGTTTGGCAACAATCCCTCCTTGGCGTCCAATAAGCCACCATATTCTGCTGACCAAATTTATGATCCCTTTTCACCAACATCTGTTGCACCTCCACACCAGAAAGGTAATCCTGGAAAATGA 2373 0.4513 MTAKFDWTSASEPHKMSGATSTTTPSSSQKLSKFGAKSGFVIPKNKLLGSLVPILRGAKKDGVTGVINEESPKQIERKSRWGPDPTQDASVKRAKVLALQIRVDQISKQLESENPEVGDAQNSPLVDENPDESKSGSQTNSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDSLPLPVQEYPGYKFVSLIYGPEGDNQKRLEKETGTKIKIHGTKADTEEKGEIKPGTDVQCSYKEMHVKISADSFDKVDAAISIIELLVSSVTGNSAADSTPSVSVSGDNTNVPNQNPHAISLSQENQAVFQPAANTQMQGDHFQYSGSWFSAVRSHTPLFASSGSIVPPNPPHLARTPHFPPQTMSPSNLISAFGAQPAPVAGFHQIIPNQQFSMQAPPPTQIFQHSQWTQTTPFGHVGPPRNPSAIPAQNLSAPTNASLSFPVSFSQSQPTPTGQLQTSASSMPQPMSGISPSPIANQPLTPHGVSSGLSGGPFNVKISVGLSNMGSMAPQPDVPQPNMSVMPRPGSIHPHHAGMSPRPSSSVGPIPGTVHSTGNRLSGPVSFPSPGISSSLQLAQQSGMPNSASHYTHVKPLASMLSNSGNFTFQGQRPNADYYQGVPRPNNQATTQGGSQEPPSGTRPPPFGFSVPDQHLQSFQRTQVSNLVDPTQAYLSAAPFGGRPGPVSIPPRHTAFPYAGQPSPRSQVPQMGMRNFIPSPQMPNLPSPGAQRGMHNRQSYPAQGTWPDIPMPLNQKFGNNPSLASNKPPYSADQIYDPFSPTSVAPPHQKGNPGK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02952 790 MobiDBLite consensus disorder prediction 600 648 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 564 583 - -
Trre5g02952 790 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 270 IPR036612 GO:0003723
Trre5g02952 790 Gene3D K Homology domain, type 1 171 290 IPR036612 GO:0003723
Trre5g02952 790 FunFam Splicing factor-like protein 1 isoform A 176 279 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 672 702 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 126 143 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 750 764 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 742 790 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 59 90 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 1 31 - -
Trre5g02952 790 MobiDBLite consensus disorder prediction 441 467 - -
Trre5g02952 790 SMART kh_6 174 267 IPR004087 GO:0003676
Trre5g02952 790 Gene3D - 90 168 IPR047086 -
Trre5g02952 790 MobiDBLite consensus disorder prediction 107 147 - -
Trre5g02952 790 PANTHER RNA-BINDING PROTEIN RELATED 59 615 IPR045071 -
Trre5g02952 790 Pfam KH domain 191 262 IPR004088 GO:0003723
Trre5g02952 790 MobiDBLite consensus disorder prediction 600 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02952 Trre-Chr5 23713827 23718547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02952 K13095 - gmx:100777227 971.459