Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02951 ATGGTTTCCAACAAAAGGATAACTGCATTATTACTTCTACTGTTGGCTAGTTTTGCAAACTCAGATTTAACAAAAGACAGAGATGAATGTGCTGACAAACTTGTTACACTTGCTAGTTGTCTTCCTTACGTTGGTGGTGATGCCAATACCCCTGCTATAGATTGTTGCACTGCCCTTAAAATAGTCCTAGATAAGACCAAAAAATGCATCTGCATCCTCATCAAAGATCGCAATGATCCAAAACTTGGCTTTGCTTTGAATGCTACTCTTGCTGTCCAGCTTCCAAATGCTTGTCACATACCATCTAATATATCTCAATGTGTAGATCTTTTGCATTTGTCACCTAAATCAGCTGATGCTAAGATATTTGAAGGACTTGGAAATTCTACCAAAACAAACACTTCCACACCAGTTTCCAGTGGTTCTGTTGTGAAGGGACCAAACTCAAGTTCTGAGGAAAAGAGTGGTGGTGGGTTGAGAAAGAGGTGGTTGGTGGCAGAAGTGATTTGTGCTATTTTACCATTTGTTTTCATATCTCACTTCTTCATCTTAGCTTGA 558 0.3925 MVSNKRITALLLLLLASFANSDLTKDRDECADKLVTLASCLPYVGGDANTPAIDCCTALKIVLDKTKKCICILIKDRNDPKLGFALNATLAVQLPNACHIPSNISQCVDLLHLSPKSADAKIFEGLGNSTKTNTSTPVSSGSVVKGPNSSSEEKSGGGLRKRWLVAEVICAILPFVFISHFFILA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02951 185 MobiDBLite consensus disorder prediction 131 154 - -
Trre5g02951 185 SMART aai_6 30 107 IPR016140 -
Trre5g02951 185 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 108 IPR036312 -
Trre5g02951 185 Gene3D - 27 107 IPR036312 -
Trre5g02951 185 CDD AAI_LTSS 37 100 - -
Trre5g02951 185 MobiDBLite consensus disorder prediction 131 156 - -
Trre5g02951 185 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 13 147 IPR043325 -
Trre5g02951 185 Pfam Probable lipid transfer 22 107 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02951 Trre-Chr5 23710747 23712243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02951 7 173 Acyl Lipid Metabolism Gene Families AT1G55260 44.643 1.18e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02951 - - pvu:PHAVU_001G268300g 235.343