Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02948 ATGTTCTCAGTGTCACTCTATACCACCACATATTCAACCCTTGTTGTTGGTTCTTCTTCTTCATTCCCTTGTTCCTTCGTCAAAACCACCATTTCTGCTACATCCATATCATCACCTACACCCAAACATGTCTGGACCCGAAAAATCAACAAACAATCTCGTACCCGAACCCAACAACAGAAACACCAACCCATATACTTAGACCGTTGGGTCGACATGAACGAACTTCTAACCTCAATCGGACAAACCCAAAACATCGAACAACTCTACTCGGTAATGTCTCCTTACAACGGAAGACAACTATCGGTTTATTTCATGGTTTCGATTCTCTCTCGTGAACCCGATTGGCAACGCTCTCTCGCACTTCTCGATTGGATGAACGAGAAAGCTCAATATTCACCTTCACTTTCAGCTTATAACGTTGTTCTTCGTAATGTACTTCGTGCTAAACAGTGGCAGTTTGCACACGGGCTGTTTGATGAAATGCGTCAAAGGGGTCTTTCCCCTGATAAGTACACTTACTCAACTCTTATTACTTCTTTTAGTAAAGATGGTTTGTTTGATTCTTCTTTCTTTTGGTTACAACAGATGGAACGTGATAAAGTTCCTGGTGATCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGGAAATTGTGTGATTATTCTAAAGCTATTACGATTTTTAATACAATGAAAGGTTCTGTTAATATTGTACCTGATCTTATAGTTTATAATACTATGATTAGTGTGTTTGGTAAGGCTAAGCTTTTTCGTGAGGCTCGGCTTCTTTTTCAAGAGATGAGGGATAATGGTATTAGCCCGAATACTTTTAGTTACTCCACGCTTCTTGCAATTTATGTTGACAATCGGAAGTTTGTTGAGGCACTTTCTTTGTTTTCTGAAATGAATGAAAGTAAATGCCGTATTGATCTCACTACTTGTAATATCATGATCGATGTTTATGGTCAGCTTCATATGATTAAGGAAGCTGATTGTTTCTTTTGGGGTATGAGGAATTTGGGAATTGAACCCAACGTGGTTAGTTACAACACGATTTTGAGGGTTTATGGAGAGGCTGAGTTATTTGGTGAAGCTGTTCACCTTTTTAGTTTGATGCAAAGGAAAGGTGTACAGCAGAATGTTGTCACATACAACACTATGATAAGTATTTATGGAAAATTTCTTGAGCATGAGAAGGCGACGAATCTTATTCAAGAAATGCAGAGTAGAGGTATTCAACCAGATGCCATCACTAATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAATTGGACAGGGCGACCATGCTGTTTCAAAAGTTAAGGACTTCTGGAGTTAAAATTGACGAGGTTCTATATCAGACAATGATTGTGGCTTATCAGAGAGCGGGTTTAGTTGCTCATGCTAAAAGACTACTTAATGAGCTTAAGCAACCAGACAACGTTTCCAGGGAGACGGCAATCACAATACTTGCCAGAGCCGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGGCAAGCTTTTGATGCCGGAGAGGTGAAGGATATATCTGTATTCGAGTGCGTCATTGATATTTTCTCTACGGATAGAAAGTATGCACACGTGATTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGCGCGAGTTTGACAAAGCAGATGCTTTATATAAACAGATGTATGAAAAAGGGTGTGTTTTCCCAGACGAAGTTCATTTTCAAATGCTCGATCTATACGGAGCGAGAAGGGATTTCAAGATGGTGGAATCATTGTTTGAGAAGCTAGATTCCCATCCCAATATCAACAAGAAGGAGTTGCATTTTGTTGTTGCTAACATTTATGAAAGAGCAGATAGATTTAATGATGCTTCCCGAATCATGAACAGGATGAATCACAAAAACAATTGA 1965 0.3924 MFSVSLYTTTYSTLVVGSSSSFPCSFVKTTISATSISSPTPKHVWTRKINKQSRTRTQQQKHQPIYLDRWVDMNELLTSIGQTQNIEQLYSVMSPYNGRQLSVYFMVSILSREPDWQRSLALLDWMNEKAQYSPSLSAYNVVLRNVLRAKQWQFAHGLFDEMRQRGLSPDKYTYSTLITSFSKDGLFDSSFFWLQQMERDKVPGDLVLYSNLIELSRKLCDYSKAITIFNTMKGSVNIVPDLIVYNTMISVFGKAKLFREARLLFQEMRDNGISPNTFSYSTLLAIYVDNRKFVEALSLFSEMNESKCRIDLTTCNIMIDVYGQLHMIKEADCFFWGMRNLGIEPNVVSYNTILRVYGEAELFGEAVHLFSLMQRKGVQQNVVTYNTMISIYGKFLEHEKATNLIQEMQSRGIQPDAITNSTIISIWEKAGKLDRATMLFQKLRTSGVKIDEVLYQTMIVAYQRAGLVAHAKRLLNELKQPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFECVIDIFSTDRKYAHVIEVFEKMREVGHFPDSNVIALVLNAFGKLREFDKADALYKQMYEKGCVFPDEVHFQMLDLYGARRDFKMVESLFEKLDSHPNINKKELHFVVANIYERADRFNDASRIMNRMNHKNN 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Trre5g02948 654 PANTHER OS01G0228400 PROTEIN 117 185 - -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Trre5g02948 654 Pfam PPR repeat 490 508 IPR002885 -
Trre5g02948 654 Pfam PPR repeat 559 584 IPR002885 -
Trre5g02948 654 Pfam PPR repeat 453 479 IPR002885 -
Trre5g02948 654 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 327 484 - -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 138 170 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 278 311 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 383 417 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 314 347 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 243 277 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 348 381 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 559 588 IPR002885 -
Trre5g02948 654 NCBIfam pentatricopeptide repeat 172 204 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Trre5g02948 654 Gene3D Tetratricopeptide repeat domain 83 217 IPR011990 GO:0005515
Trre5g02948 654 Gene3D Tetratricopeptide repeat domain 218 324 IPR011990 GO:0005515
Trre5g02948 654 Pfam PPR repeat family 240 284 IPR002885 -
Trre5g02948 654 Pfam PPR repeat family 134 182 IPR002885 -
Trre5g02948 654 Pfam PPR repeat family 381 424 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Trre5g02948 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Trre5g02948 654 Pfam Pentatricopeptide repeat domain 298 359 IPR002885 -
Trre5g02948 654 Gene3D Tetratricopeptide repeat domain 328 480 IPR011990 GO:0005515
Trre5g02948 654 Gene3D Tetratricopeptide repeat domain 481 654 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02948 Trre-Chr5 23680634 23682598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02948 135 617 Glycosyltransferase AT1G05670 23.361 7.85e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02948 - - mtr:11437358 1085.09