Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02946 ATGAGTATACCATTTTCTGTGGCAGCTAAGCCATCCACTATTAGGACTACTAGGAAACCATGTTGTAGAAGGTATGATGTTATTGTAAGATCAGAATTAACCATGGTTCCAAAACATAGAACAACCACCTTGTTTCCTCAATTGTCAAATCAAGGAGTTTCTGTTGCTGATTTACATGTACAAGAAGTTGTTGAAAAGCAGTCTCAAACAACCAATTTTGATACTCTATGTTCTAATTTTAAGCCGCGGTTTGAGCCTAGTTTTCTCAAGGATGCTTATGAAATGTGTAGAAACATTTGTGCAGAATATGCCAAGACATTCTATCTAGGAACTTTGCTTATGACTGAAGAAAGACAGAAGGCTATATGGGCTATATATGTTTGGTGCAGGAGAACAGATGAACTAGTTGATGGTCCTAATGCCGATTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATAGATTGGATGACATTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTTACTGATACAGTTTCCAATTTTCCCTTAGATATTAAGCCTTTTAGAGACATGATAGAAGGTATGAGAATGGATACAAGGAAGACGCGATACAAAAATTTCGAAGAATTATATCTTTACTGCTACTATGTGGCCGGAACCGTTGGGTTGATGAGTGTTCCGGTAATGGGAATTGCCCCGGAGTCCCTCATCCCTGCTCAAAGTGTTTATAACTCAGCATTATATCTTGGTATTGGAAATCAACTCACAAACATTCTTAGAGATGTTGGGGAGGATGCTTTAAGAGGTAGAGTGTACCTTCCACAAGATGAACTTGGTGAGTTTGGTTTATGTGACAAGGATGTTTTCTCAGGAAAGGTGAGTGAAAGATGGAAAGAGTTTATGAAACAGCAGATTGCAAGGGCAAGATTCTACTTCAATTCTGCAGAAGAAGGAGCTTCTCACCTTGACAAGGCCAGCCGTTGGCCGGTTTGGTCGTCATTAATATTGTATCGAAAGATCTTAGATGCAATTGAAGACAACGATTATGATAATTTAACAAAACGAGCTTATGTAGGACGAACTGAGAAATTTGTGTCGTTGCCTGCAGCTTATTCTAAATCTCTCTCAATTCCTAAAACGGAACCGCATCCTTCCTTCACAAGGCTTATGTAA 1167 0.3916 MSIPFSVAAKPSTIRTTRKPCCRRYDVIVRSELTMVPKHRTTTLFPQLSNQGVSVADLHVQEVVEKQSQTTNFDTLCSNFKPRFEPSFLKDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEDRLDDIFNGHPYDMLDAALTDTVSNFPLDIKPFRDMIEGMRMDTRKTRYKNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYNSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELGEFGLCDKDVFSGKVSERWKEFMKQQIARARFYFNSAEEGASHLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYSKSLSIPKTEPHPSFTRLM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02946 388 SUPERFAMILY Terpenoid synthases 91 373 IPR008949 -
Trre5g02946 388 Gene3D Farnesyl Diphosphate Synthase 86 368 IPR008949 -
Trre5g02946 388 SFLD Isoprenoid Synthase Type I 90 371 - -
Trre5g02946 388 FunFam Phytoene synthase chloroplastic 85 367 - -
Trre5g02946 388 Pfam Squalene/phytoene synthase 103 358 IPR002060 GO:0009058
Trre5g02946 388 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 25 374 - -
Trre5g02946 388 ProSitePatterns Squalene and phytoene synthases signature 1. 211 226 IPR019845 GO:0016765
Trre5g02946 388 SFLD Phytoene synthase like 90 371 IPR044843 GO:0004311
Trre5g02946 388 CDD Trans_IPPS_HH 94 361 IPR033904 GO:0004311
Trre5g02946 388 ProSitePatterns Squalene and phytoene synthases signature 2. 247 272 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02946 Trre-Chr5 23661029 23663403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02946 K02291 - gmx:100782394 584.334