Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02941 ATGGCGAAGAAAGTTAAAAAGAAGAGTCGAAGTGTTGTTAAGGAGAAGGGAGTTGCTGTCAATTTGTCGCCGAAAAATGTTACGGAATCGGACAATCCAACTGTTGATGAGGGGGTTTTAGTTGCAATAGAGACAAACCCTTGCCCTCATCTTGTTAAAGGTGTTAATTTAGAAAAATTGTCTGGTAAGATTGAGTCTTCTAGGTTTATAAGTTGTGAAGATTGTAGGGAAGGGGCGGCTGATAGGAGGGGCAGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCTTTAGACTCCAAATCCGATTCGAGGTCTATATGGGTTTGTTTGGAATGTGGCCATTATACCTGTGGAGGTGTGGGGCTACCAACAACCCCTCATTGTCATGCTGTTGGGCATGCAAGGAAAACACGGCACCCATTAATGGTTAATATTGATAAACCTCAACTTTGTTGGTGTTTTCGTTGCGATATGTTTATTCAATTTGATAAATTTGAAAAAACTGATGAAACAAGTCATCTTATATCTGATGTTGTGAAATTGCTAAAAAAACGATCTTCAGAGAAACCGTTAGTGGATATCGAGGATGTTTCCGTTGGGGGTGGCAATGTTATTGCAGAAATTAAGTCAGGATCTCCGTCTATAAGTGATTCATATGGACAGCGTGGTTATGTAGTTCGAGGCATGGTTAATCTTGGGAATACTTGTTTCTTTAATTCAATCATGCAAAATCTGCTTGCTATGAAAAAATTGCGGGACAATTTTCTGAAGATCGATGCTCCTGTTGGGCCACTGATTAGTTCGTTGAAGAAGTTGTTCAATGAAACAAACCCAGAATCAGGATTGAAAAATAGTATAAATCCGAGATCCTTTTTTGGCAGTGTATGTTCTAAGTCTCCCCAATTCCGAGGATATCAGCAACATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAGCTGGCTGGAATGAAGCAGAATGGTTCTCTTAAGACAGACGGAACCTCTTCCAATACTTCAATCGATGCTTTATTTGGCGGTCAGATATCTAGTACTGTATGTTGCAACGAATGTAAGCATTCCTCAACAGTGTATGAGCCGTTTTTAGATCTTTCCCTCCCTGTTCCAACTAAGAAACCTCCGCCTCGGAAGGCTCCACAAGTGTCCAGAACCAAAAAGACAAAACTTCCACCCAGAAAAGGAGGAAAGACTCAGACTCGAGTCAAAATTAACAGGGATGCCGATCCTTTACCCGTTCAAAATGTACCGGGCCAATCAGTCAGCCATGAATCGTCTTGCCCTGACCAGTCTGTCATATCTGTTTCTGGTGAAATGGCTGCTTCTTCTGGTGATTCTACGGTATTAGATTCTGAAGAAATAAGCAGCGTGGCCAATAAAGAGGACTTGTCTCCACCTAATTTGGTTACTGTTGAAGAGTCTCAACAAATGCAAGTGGTTGACAGTGTTGCAAATAAAACATCAGATTCATCAGATAATTTTTCTTGGTTAGATTATGTGGGAGCTGAAACCATGATAGACGAATATGCTTCCGTATCCCAGAACGAAGATACACCGGAGGTACAAATGCAAGTGGTTGAGAGTGTTGCAAATAAAACATCGGATTCATCAGATGATTTTTCTTGGTTGGATTATGTGGGAGCTGAAACCATGATAGACGACTATGCTTCCGTATCCCAGAAGGAAGATGCACCGGAGGTACAAAACTCTGAGACCAAGGATGAACGTTTGACTGTATTCACTGAACAAGCTAGTTGTGAAACCAGCGGTCCTGATTCTTTCATTAAGGAAGATCAAAACCTAAGACCTGATTTTTCTTCAGCAAATGGGTTGGAAGATGAGGTTCCTTTACAAGTTCGAGATTCAGAAGTGCTGTTACTTCCATACAAACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAGGTTCCTTGACCGGGGATATCATTGAAAGAGATGGCGAGGCCTCCTCGTCTGTTTTAGGTGGTGGTCCAGAAGAATCGGAGTTTGAAGGCTTTGGTGGCTTATTTAATGAGCCTGAAGTTTTTGCTGGGCCTGCTCCCAGACCTTCTTCATCCGGTGATGTGGATTCTGGCATTATCATTAGAAACAACAGTGAATCAGATCCAGATGAAGTAGATGATACAGATTCTCCGGTCTCTGTAGAGAGTTGCTTGGCTCATTTTATAAAACCCGAGCTTCTTTCAGATGATAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCGACGTCAAAAGAAGAAAGCAAAACAGCAGGCAAGAACTCTATCTGATGGAAATGCGAGTGGTAGTCACAATGAATCACTGCATGCATCTAACTCGTGTTCTTTTGAAGTCAGTAGTAGTACAGGAAATGGAGATATTAAAAACGACAAGAGTATAGAAAGTTCAGTTTCACATGTTCAACATGGCACAGAGCTTGAAAACAGTCAAACAGATGAGCTGCAGAATGATGAATTAAAGTCTTGTTTACAACAAGCTTCCAATGAAGAAAGCTGCAATAATTCAACTTCTGATTCTTGTATTACTGGTAATGTCCAACAAGATGCTCCAATGTTAGATAATGATGGCGATGACTCAGAAGAATGCAGCGACAAAGAGTCCGACTTAGAAAGCATGAGAGTGAATAGGGATGCAACTAAGAGAGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATCTGAAGAGATTCAGTCAAGATGCTCGTGGCCGCTTAAGTAAATTAAATGGTCATGTCAACTTCAGAGAAACAATGGATTTTAGACCATATATGGATCCCAGGTGTATAAATGAAGAGAAGTATGAATACCAGTTGGTTGGTGTAGTGGAGCACTCGGGAACCATGCGAGGTGGTCACTATGTTGCCTATGTGAGAGGGGGCCAGAGGAACAGAGAGAAGGTTGATAATAAAGAAAATGAGAGTTCCACATGGTATCATGCGAGTGATGCGTATGTGCGTCAAGTTTCCCTTGATGAAGTTCTTCGCTGCGAGGCATACATTTTGTTTTACGAAAGAAATTGA 3102 0.4133 MAKKVKKKSRSVVKEKGVAVNLSPKNVTESDNPTVDEGVLVAIETNPCPHLVKGVNLEKLSGKIESSRFISCEDCREGAADRRGSKGKGKHGKKKGGASLDSKSDSRSIWVCLECGHYTCGGVGLPTTPHCHAVGHARKTRHPLMVNIDKPQLCWCFRCDMFIQFDKFEKTDETSHLISDVVKLLKKRSSEKPLVDIEDVSVGGGNVIAEIKSGSPSISDSYGQRGYVVRGMVNLGNTCFFNSIMQNLLAMKKLRDNFLKIDAPVGPLISSLKKLFNETNPESGLKNSINPRSFFGSVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGMKQNGSLKTDGTSSNTSIDALFGGQISSTVCCNECKHSSTVYEPFLDLSLPVPTKKPPPRKAPQVSRTKKTKLPPRKGGKTQTRVKINRDADPLPVQNVPGQSVSHESSCPDQSVISVSGEMAASSGDSTVLDSEEISSVANKEDLSPPNLVTVEESQQMQVVDSVANKTSDSSDNFSWLDYVGAETMIDEYASVSQNEDTPEVQMQVVESVANKTSDSSDDFSWLDYVGAETMIDDYASVSQKEDAPEVQNSETKDERLTVFTEQASCETSGPDSFIKEDQNLRPDFSSANGLEDEVPLQVRDSEVLLLPYKQVQNSEVLLLPYKEEGSLTGDIIERDGEASSSVLGGGPEESEFEGFGGLFNEPEVFAGPAPRPSSSGDVDSGIIIRNNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDDNAWHCENCSKILRRQKKKAKQQARTLSDGNASGSHNESLHASNSCSFEVSSSTGNGDIKNDKSIESSVSHVQHGTELENSQTDELQNDELKSCLQQASNEESCNNSTSDSCITGNVQQDAPMLDNDGDDSEECSDKESDLESMRVNRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDFRPYMDPRCINEEKYEYQLVGVVEHSGTMRGGHYVAYVRGGQRNREKVDNKENESSTWYHASDAYVRQVSLDEVLRCEAYILFYERN 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02941 1033 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 230 1033 IPR028889 -
Trre5g02941 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 186 IPR013083 -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 699 736 - -
Trre5g02941 1033 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 231 246 IPR018200 GO:0004843|GO:0006511
Trre5g02941 1033 MobiDBLite consensus disorder prediction 393 410 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 429 445 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 1 33 - -
Trre5g02941 1033 Gene3D Cysteine proteinases 791 1033 - -
Trre5g02941 1033 FunFam Ubiquitinyl hydrolase 1 43 186 - -
Trre5g02941 1033 Pfam Ubiquitin carboxyl-terminal hydrolase 231 1030 IPR001394 GO:0004843|GO:0016579
Trre5g02941 1033 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 963 980 IPR018200 GO:0004843|GO:0006511
Trre5g02941 1033 Gene3D Cysteine proteinases 216 407 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 857 875 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 79 103 - -
Trre5g02941 1033 SUPERFAMILY RING/U-box 46 173 - -
Trre5g02941 1033 SUPERFAMILY Cysteine proteinases 229 1032 IPR038765 -
Trre5g02941 1033 SMART Zf_UBP_1 100 153 IPR001607 GO:0008270
Trre5g02941 1033 MobiDBLite consensus disorder prediction 380 445 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 774 817 - -
Trre5g02941 1033 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 44 1033 - -
Trre5g02941 1033 Pfam Zn-finger in ubiquitin-hydrolases and other protein 72 167 IPR001607 GO:0008270
Trre5g02941 1033 ProSiteProfiles Zinc finger UBP-type profile. 46 182 IPR001607 GO:0008270
Trre5g02941 1033 MobiDBLite consensus disorder prediction 779 817 - -
Trre5g02941 1033 MobiDBLite consensus disorder prediction 857 899 - -
Trre5g02941 1033 Gene3D Cysteine proteinases 713 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02941 Trre-Chr5 23571880 23575243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02941 904 1032 Miscellaneous Gene Families AT2G24640 37.121 3.36e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02941 K11844 - gmx:100776156 1300.03