Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02826 ATGGCACCAACTGTTCCCGTAGATTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCTTTCACAAATCATGGGGAAATCTCGAAAATATTCCAAAGGTTATGCTACTACTGGCTTTGTTCCTGAATTCCGTCATGTTGTAGAGACTATGGGTGAATCAGATGGGTTGGGTAGCTCGGGAAGGCTTGACATGGAGCCTGCGGCATCAGCAGATTCCTATGCCCCGAGCAAGAAAGGCGCTGGTTTGAAAAGTGATGATGGTTATGGTGGTTTTGATGTACCATTTCAAGTCTTCTTATTGTCTAAAATGTCGGCTAGGGAGAGAAAGGATTTGAAATCGAGTTTAACTTTGGAACTTGAACAAGTTAGGAAACTTCAGAAGAAAATTGACAGTATGAATTCAAACATTGTTGGATTATCTCCGTCTAGTGACATACGGAGCTGCAGTGTGGGAATGAAAAGGCCTCATCTGGAGAGCCAACACAGTATACTTCAAGCATCAGTGCCACATGGTAAGAAAAGACCCTTGCCAGGACGTAGTGGTCCCAAGACCAAAAAAGGTATGTCTGGGCGATTTGAATACCCTAAACCTGTTGCACCAATGACTACTTCATATGCTACATTGATGAAACAGTGCGAGAATTTACTTAACCGTTTGATGTCTCATCAATATGGTTGGGTTTTTAATGCACCAGTTGATATTGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAACATCCAATGGATTTGGGTACTGTTAAGAGTAAACTAACGTCTGGAAAATATTCTAGTCCTATTGCTTTTGCTGCTGATGTGAGGCTGACTTTCTCAAATGCCATGACATATAATCCACCTGGCAATGATGTACATGGCATCGCAGCAACACTTATGAAAGCCTTTGAAACAAAATGGAAGTCCATTGAGAAGAAAATTCCGAACATTGAACATCGTGTCCCATCTGAGCCTTCAAAACCTATTTGTGTAGAAACTGAAATTCCTGACCCAATTCCCCCCACAAAAAAGAAGAAAATTACACCAAATAACACTAACACTAAGCCAGAACCTGACAAAAGAATTATGAGTGACATGGAGAAGCAGAAATTGAGTCAAGAGTTGGAGGACATGCTTGGAGAGTTGCCTGAAAACATTTTGGATTTCTTGAAAGAGCAAAGTCACAATGCAGGGCAAACTAACGATGATGAAATTGAGATTGATATTGATGTTCTAAGTGATGATACCTTATTCAAATTGCGGAAGCTTCTTGATGATTTTATGGTCGAGAAGCAACGATTTCAGCCAAAAGTTGGACAGTGTGAAATGAAGCTTCTTAATGAATCAGGGTTTAGCAATTCATCAATGCAACCTTCTAAAGAGATTGAGGAGGATGTGGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTAATTCAAATTATCCTCCACTAGAGATTGAGAAAGATGGTGCCAACAGAAACAGTAAATGCAGCAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCGTCATCCAGTGATTCAGATTCAAGTAGTTCATCTGGTAGTGAGTTAGATACTGCTAAAGCGTCAGAACCTATTAGTTCTAAGGAAAATGTAGGACATGGCTTGACTTATGATCAAAACAGGGGGGATCTTAGTAATCCAGAAACTGGAAATGATTCAACTAACCTGGGTAGCCAGGTTGACCAGAGTTTGCAGACTAAGCCAGTTGCTATTGAATCAGAAAGCCATCAAGATGGGGAGAGTGCTGCGTCTAAGAGGCAAGTCTCTCCTGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGGTTTGCTGACACCATACTGAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGAAAAACGTGACCCTGAAAAGCTTAGGATAGAGCGAGAAGAACTTGAGAGAAGGCAGAAGGAAGAGAAAGCTCGACTGCAAGCAGAGGCGAAGGCTGCAGAAGAGGCTCGGATGAAAGCTGAGGCAGAAGCTGCTGCTGAAGTCAAAAGGAAGAGGGAATTAGAGAGAGAAGCTGCCCGTCAGGCTTTGCAAAAGATGGAGAAAACTGTTGACATCAATGAGAGCTGCCAGTTTTTGGAAGATCTAGAGATGCTTAGTGCTGTTCATGATGAAAATACACCAAGTTTCAAAGAGGAGGCGAGTCCAGAAGATCATCAAAATGGATTTGGTGGGATCAAGCTGCAGGGAAATCCCTTAGAGCAGTTAGGATTGTACATGAAGGTTGATGATGAGGATGAGGAGGAAGAACTGCCTCAAAGTACTGCAGAGCCATCAAAAGATGTTGAAGAAGGAGAAATTGATTGA 2349 0.4202 MAPTVPVDFAGQKESRKYSLSQIMGKSRKYSKGYATTGFVPEFRHVVETMGESDGLGSSGRLDMEPAASADSYAPSKKGAGLKSDDGYGGFDVPFQVFLLSKMSARERKDLKSSLTLELEQVRKLQKKIDSMNSNIVGLSPSSDIRSCSVGMKRPHLESQHSILQASVPHGKKRPLPGRSGPKTKKGMSGRFEYPKPVAPMTTSYATLMKQCENLLNRLMSHQYGWVFNAPVDIVKLNIPDYFTVIKHPMDLGTVKSKLTSGKYSSPIAFAADVRLTFSNAMTYNPPGNDVHGIAATLMKAFETKWKSIEKKIPNIEHRVPSEPSKPICVETEIPDPIPPTKKKKITPNNTNTKPEPDKRIMSDMEKQKLSQELEDMLGELPENILDFLKEQSHNAGQTNDDEIEIDIDVLSDDTLFKLRKLLDDFMVEKQRFQPKVGQCEMKLLNESGFSNSSMQPSKEIEEDVVEEDVDIVGGNDPPNSNYPPLEIEKDGANRNSKCSSSSSSSSESGSSSSDSDSSSSSGSELDTAKASEPISSKENVGHGLTYDQNRGDLSNPETGNDSTNLGSQVDQSLQTKPVAIESESHQDGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREELERRQKEEKARLQAEAKAAEEARMKAEAEAAAEVKRKRELEREAARQALQKMEKTVDINESCQFLEDLEMLSAVHDENTPSFKEEASPEDHQNGFGGIKLQGNPLEQLGLYMKVDDEDEEEELPQSTAEPSKDVEEGEID 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02826 782 Pfam Bromodomain extra-terminal - transcription regulation 362 424 IPR027353 -
Trre5g02826 782 MobiDBLite consensus disorder prediction 326 359 - -
Trre5g02826 782 Coils Coil 108 135 - -
Trre5g02826 782 SMART bromo_6 201 311 IPR001487 GO:0005515
Trre5g02826 782 Gene3D - 355 434 IPR038336 -
Trre5g02826 782 MobiDBLite consensus disorder prediction 623 666 - -
Trre5g02826 782 CDD Bromo_plant1 208 306 IPR037377 -
Trre5g02826 782 MobiDBLite consensus disorder prediction 495 535 - -
Trre5g02826 782 MobiDBLite consensus disorder prediction 717 782 - -
Trre5g02826 782 ProSiteProfiles NET domain profile. 352 434 IPR027353 -
Trre5g02826 782 SUPERFAMILY Bromodomain 198 315 IPR036427 GO:0005515
Trre5g02826 782 MobiDBLite consensus disorder prediction 471 600 - -
Trre5g02826 782 Pfam Bromodomain 212 295 IPR001487 GO:0005515
Trre5g02826 782 MobiDBLite consensus disorder prediction 549 582 - -
Trre5g02826 782 PRINTS Bromodomain signature 273 292 IPR001487 GO:0005515
Trre5g02826 782 PRINTS Bromodomain signature 223 236 IPR001487 GO:0005515
Trre5g02826 782 PRINTS Bromodomain signature 239 255 IPR001487 GO:0005515
Trre5g02826 782 PRINTS Bromodomain signature 255 273 IPR001487 GO:0005515
Trre5g02826 782 MobiDBLite consensus disorder prediction 717 732 - -
Trre5g02826 782 Gene3D - 198 320 IPR036427 GO:0005515
Trre5g02826 782 ProSiteProfiles Bromodomain profile. 220 292 IPR001487 GO:0005515
Trre5g02826 782 PANTHER TRANSCRIPTION FACTOR GTE8 101 767 - -
Trre5g02826 782 Coils Coil 638 697 - -
Trre5g02826 782 MobiDBLite consensus disorder prediction 51 79 - -
Trre5g02826 782 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02826 Trre-Chr5 22535585 22540135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02826 - - gmx:100776368 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02826 5 22535585 22540135 Trre5g02826 5 22535585 22540135 ECH