Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02816 ATGAAACGGTTTTTCAAAGTAGTAGAGAAAGATTCAGAAAAATGTTCCAAGAAAGCAAAAGAAAACGAGAACGAGAATGAAGAAGAAGAAAAAGTAGAAACCAAGAAGGAGCCATTGAAGTTCATGACATGGAACGCTAACAGTTTATTCCTCCGCGTAAAAAACAATTGGTCAGAATTCAGCAATTTCATCACTACCTTCGATCCCGATGTCATTGCCATTCAAGAAGTTCGAATGCCTGCTGCTTCTTCTTCTTCCAATTCCAAATCCGCTCCTAAAAATCAAGCTGAAATTAAAGATGATACTAACTCCTCCAGGGAAGAAAAAAGGATATTGATGCGTGCGCTTTCAAATCCACCATTTGGGAACTATCGTGTTTGGTGGTCTCTCGCAGATTCAAAGTATGCAGGGACAGCACTATTTGTGAAAAAATGTTTCAAGCCCAAAAGTGTTGTTTTCAATCTTGATAAAATAGCTTCAAAGCATGAACCAGATGGCCGAGTAATCTTAATCGAGTTTGAAACACTTCGTTTATTGAATACATATGTACCAAATAATGGGTGGAAAGAGGAGGCAAACTCATTCCAAAGAAGAAGAAAATGGGACAAAAGAATCTTGGAATTTGTTAACCAAAATTCAGACAAGCCTTTGATATGGTGTGGGGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCAGAGTTTTTCAGTACAGCAAAACTCAATGGTTATGTTCCTCCAAATAAAGAGGATTATGGGCAGCCTGGATTTACCTTGGCTGAAAGAGCACGATTTGGTACCATCTTAAAAGAGGGAAAGCTGGTAGATGCCTACAGATTTCTGCACAAGGATAAGGACATGGAGCAGGGCTTCTCATGGTCTGGAAACCCAATTGGGAGGTACCGTGGAAAGCGGATGAGAATAGACTATTTTACAGTTTCAGAAAAACTGAAAGAAAAGATTGTTGCATGTGAAATGCACGGACAAGGGATTGAGTTACAAGGCTTCTATGGAAGTGATCATTGTCCAGTTACCTTGGAGCTCGCTCCTAGTTCTAACTCTCAAAATGACGATCCAATATAA 1089 0.3967 MKRFFKVVEKDSEKCSKKAKENENENEEEEKVETKKEPLKFMTWNANSLFLRVKNNWSEFSNFITTFDPDVIAIQEVRMPAASSSSNSKSAPKNQAEIKDDTNSSREEKRILMRALSNPPFGNYRVWWSLADSKYAGTALFVKKCFKPKSVVFNLDKIASKHEPDGRVILIEFETLRLLNTYVPNNGWKEEANSFQRRRKWDKRILEFVNQNSDKPLIWCGDLNVSHEEIDVSHPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILKEGKLVDAYRFLHKDKDMEQGFSWSGNPIGRYRGKRMRIDYFTVSEKLKEKIVACEMHGQGIELQGFYGSDHCPVTLELAPSSNSQNDDPI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02816 362 Coils Coil 10 37 - -
Trre5g02816 362 MobiDBLite consensus disorder prediction 15 35 - -
Trre5g02816 362 MobiDBLite consensus disorder prediction 82 106 - -
Trre5g02816 362 FunFam DNA-(apurinic or apyrimidinic site) lyase 10 352 - -
Trre5g02816 362 PANTHER AP ENDONUCLEASE 23 351 IPR004808 GO:0004518|GO:0006281
Trre5g02816 362 ProSiteProfiles AP endonucleases family 1 profile. 39 352 IPR004808 GO:0004518|GO:0006281
Trre5g02816 362 CDD Ape1-like_AP-endo 39 350 - -
Trre5g02816 362 Gene3D Endonuclease/exonuclease/phosphatase 4 352 IPR036691 -
Trre5g02816 362 Pfam Endonuclease/Exonuclease/phosphatase family 42 343 IPR005135 GO:0003824
Trre5g02816 362 NCBIfam exodeoxyribonuclease III 39 350 IPR004808 GO:0004518|GO:0006281
Trre5g02816 362 SUPERFAMILY DNase I-like 39 350 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02816 Trre-Chr5 22424808 22430347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02816 - - gmx:100817167 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02816 5 22424808 22430347 Trre5g02816 5 22424808 22430347 ECH