Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02813 ATGGCTGAGAAGTTGGGGGGTTCAGAAGACAGTTCAAGCTGGAAGAGAAGTAACCCCACCACTTCCAAACTCGTCGTTTTGGCTGACCTCAACGTCGATCCTCCAGAAGCCGAACCCGATGACGATGATTCTTCACTTCTCCCTCCCCCTCACATTCAAATTACCAGGTTGATAAATGATGAAAACAGTCAAGACAAGAGCTTGTTGTCCAAAGACACCGATAGCATTGAAGGTGAAGGTAAAAAGTTTAACAAGCCGGGGAAATGCCGTTCCAAACCTAGCAAGACAGATTCTTCTATTGATTGTGGAGCTGATGCGGATGGTGATCAACATGTTCAACTCCAAGGGGCTCCTGCATCTCGGGAGGAAAAAGTTAGCAGCATGAAGACTGGATTGGTTCATGTTGCGAGGAAGATGCCTAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAACCAACCTCAAAAGGCTATATTGGCTTATGAGAAGGCAGAAGAGATATTACTCAGGCCTGAGGTTGAGATTGATAGACCAGAGTTTCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATAATAGAAAGTTCATCAGAAAATAATTCAGACAAAGAACTTGAATCTCACGAACTTGAGGAAATTATTTCTAAATTGAAAGAATCAATGCAATCAGATATCAGGCAGGCAGCTGTATGGAATACTCTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCCTTGTTGGCCACTGCACCAGAGAACTATGATTGCCTAGGTAATCTTGGGATAGCTTATCTTCAAATAGGAAATTTGGAATCATCTGCAAAGTGTTTCCAAGAGTTGATCCTAAAAGATCAAAACCACCCTGCAGCATTGGTCAATTATGCTGCCCTTCTTCTGTGTAAATATGCTTCAGTTGTAGCAGGTGCTGGTGCAAATGCTGCTGAAGGTGCTTTGGCCGAACAGTCCAAGGCTGCTAATGTTGCCAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGGAAAATCAGCCCATATTTGGGCAAATCTTGCCTATGCATTTTCTATCAGTGGGGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCAAAACTGGAACCCAATTGCATGTCTACTCGTTATGCTGTTGCTAGCCATCGAGTAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAATTGCTTTCATGTGCTGGAAATGAGATGGTTTCCATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAATAGCATGGTCCGGGCTTGCAATGGTTCACAAGGCTCAGCATGAGATATCAGCAGCATATGAAAGTGAACAGCATGAGCTGGCAGAAATTGAAGAGCGTGCGGTTTCCAGTCTAAAGCAGGCCATAGCAGAAAATCCAGATGATGCTGTGCAGTGGCACCAACTTGGCCTTCACAGTCTCTGTGCTAGGCAATTCAAAACATCACAAAAATATCTCAAAGCTGCTGTTGCCTGTGACAAGCTATGCAGCTATGCATGGTCCAACCTCGGTGTCTCACTTCAACTATCAGACGAACAATCACACGCTGAAGAAGTTTACAAGCGGGCTTTGTCTTTGGCAACAACACAAGAAGCACATACTATACTATCCAATATGGGAATTCTCTATCGCCATCAGAAAAAATATCAACTTGCAAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCAGGTTATGCTCCTGCATTCAACAATCTGGGTCTTGTTTTTGTTGCCGAGGGTCTGTTAGAAGAAGCCAAGTATTGTTTTGAGAAAGCACTTGATTCAGATCCATTGCTGGATGCAGCCAAGTCTAACTTGATTAAGGTTTCCACAATGTCAAACATATGCAAAGGCCTTTCCTCATGCATTCTTAAAGAATGA 1953 0.4306 MAEKLGGSEDSSSWKRSNPTTSKLVVLADLNVDPPEAEPDDDDSSLLPPPHIQITRLINDENSQDKSLLSKDTDSIEGEGKKFNKPGKCRSKPSKTDSSIDCGADADGDQHVQLQGAPASREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKAILAYEKAEEILLRPEVEIDRPEFLSLVQIHHAQCLIIESSSENNSDKELESHELEEIISKLKESMQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLATAPENYDCLGNLGIAYLQIGNLESSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGAGANAAEGALAEQSKAANVAKECLLAAIKADGKSAHIWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVASHRVKEAERSQDPSELLSCAGNEMVSIIRDGDSSLVELPIAWSGLAMVHKAQHEISAAYESEQHELAEIEERAVSSLKQAIAENPDDAVQWHQLGLHSLCARQFKTSQKYLKAAVACDKLCSYAWSNLGVSLQLSDEQSHAEEVYKRALSLATTQEAHTILSNMGILYRHQKKYQLAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFEKALDSDPLLDAAKSNLIKVSTMSNICKGLSSCILKE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02813 650 Pfam Tetratricopeptide repeat 357 390 IPR019734 GO:0005515
Trre5g02813 650 Pfam Tetratricopeptide repeat 143 172 IPR019734 GO:0005515
Trre5g02813 650 Gene3D Tetratricopeptide repeat domain 434 543 IPR011990 GO:0005515
Trre5g02813 650 Coils Coil 206 226 - -
Trre5g02813 650 Gene3D Tetratricopeptide repeat domain 123 177 IPR011990 GO:0005515
Trre5g02813 650 SUPERFAMILY TPR-like 469 625 IPR011990 GO:0005515
Trre5g02813 650 SMART tpr_5 234 267 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 556 589 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 520 553 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 590 623 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 486 519 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 143 176 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 268 301 IPR019734 GO:0005515
Trre5g02813 650 SMART tpr_5 357 390 IPR019734 GO:0005515
Trre5g02813 650 MobiDBLite consensus disorder prediction 1 108 - -
Trre5g02813 650 Pfam Tetratricopeptide repeat 244 303 - -
Trre5g02813 650 Pfam Tetratricopeptide repeat 556 618 - -
Trre5g02813 650 Coils Coil 457 477 - -
Trre5g02813 650 MobiDBLite consensus disorder prediction 11 25 - -
Trre5g02813 650 ProSiteProfiles TPR repeat profile. 590 623 IPR019734 GO:0005515
Trre5g02813 650 MobiDBLite consensus disorder prediction 65 95 - -
Trre5g02813 650 ProSiteProfiles TPR repeat profile. 234 267 IPR019734 GO:0005515
Trre5g02813 650 Gene3D Tetratricopeptide repeat domain 204 318 IPR011990 GO:0005515
Trre5g02813 650 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 20 646 - -
Trre5g02813 650 ProSiteProfiles TPR repeat profile. 556 589 IPR019734 GO:0005515
Trre5g02813 650 SUPERFAMILY TPR-like 139 172 IPR011990 GO:0005515
Trre5g02813 650 ProSiteProfiles TPR repeat profile. 357 390 IPR019734 GO:0005515
Trre5g02813 650 SUPERFAMILY TPR-like 234 517 IPR011990 GO:0005515
Trre5g02813 650 Gene3D Tetratricopeptide repeat domain 323 422 IPR011990 GO:0005515
Trre5g02813 650 Gene3D Tetratricopeptide repeat domain 544 639 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02813 Trre-Chr5 22410059 22416290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02813 471 622 Glycosyltransferase AT3G04240 24.183 1.07e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02813 - - gmx:100820184 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02813 5 22410059 22416290 Trre5g02813 5 22410059 22416290 ECH