Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02812 ATGGCGGATGATAGTATTCGCAGCGTGACACTTCTATGCCCCCCAAAACATCCCAGCAAAGAATCCGACCCGGGAATCCACTGCTGGTTAATCGGATCCCCATTCTTACCGCCACTTACCATCGTCTCAATCCTCCGATGTATCCACACCATCCCCTCTTCCCCTTCTCCCGATTGGCGCAAAGAATCACAAGACCTTAAAACCCTAATTCCCAAAGGCTTTGAACTAATCGGATCTCTAGCTTCCGGAGATGACACCATTGCTCGGGCCGCAATCGATGCTGCTCGTGAAATAAGGAAGCTCCTCTACGGTGAAGGAACGGTTGAAGATCAACCGCTGATCGGAGCTGTTTCAAGTTCGGATTCTGGCGAGCTTCAGTTTTTTGTGTCTGAGAGTGGAAATGCGAGTAGCCGAATTGAACCTGTTACGTCGATCATACAGGAAGAACATCCGGAGAAGTTTTTGTGGGAGAATGGCTGCTTGCTTCGTTGTGAGCTTCCGATTAAGTTGCCAATCTATTACCCTCTCAAAAATCCAACTGATATTGAAAAAGCATATGTACAGGCAACTGAAGCTGTTATTGCCAAGTTAAGAGACCCTCAAGCTGTGTACATGTTAGAAACATTGAGCAATACCTGTCCAGATCAATCTCCACCTGCCATAGTTCGAGGTGCACAATTAGACTTTCACACAGGCCTCTCCAAAACCAAGCCTTTGGCTAAGGGTGACAAGGGCTCTGATGCAAGCTCACTATCCTGTTCATACTTTTCCATCAACAATAAAGCAGCATTTTCCATTGAGAATGCAGATACTATCCAAGTGAGTATTCTTTTTAATAGCTTAGGGCCATCGTCAACATCTGATGCGCCTATTGCAGAATATCTTCCAGTCCTGGAAGAAGCCAGACTCGTTGTTGTGGATATTAAGCTAGATGTACTTTGCTATTCTTCAAAGGAACTTCCACTCAAACATGCAGTTTCATGTTTAATCATCCCTAGCTTAACTGACCAGTTAAATATCCTGCAGAACTTTATGTTACCAAACCTTTTGGCACAACATCCTCAGCTAAAACCTTATCACTATAGCCCTCCTGGGGTTCTGCATCCAATAACTGTTTTCTATGAATTGAGTTTTGGGGAGACAGAAATGAAGCAAGTTGAATTTAGGAGATCCCTGCATTCTAGGTTGGGGCTACCTTATGATCGTCCCCTTCTAAGAATTGCTAATGCATTGGATTTTTCAAAATTGAAAAATAGTGGTACTGTCTCTCTACAGAAAGGTTCAACTTTGCTCAGAGATGTACACATTGGGATTCCAAGCAGTGGAGTTACTGGGGGGACTCTGTCCATTGTTCAAGGTTCTTATGAATACCATCATTATCTTCAGGATGGTTTCAATGATTCGGGATGGGGTTGTGCTTATCGCTCTCTCCAGACTATCATTTCATGGTTCAAACTCCAAAACTACTCATCTATAGAAGTTCCTTCTCATAGAGAAATACAGCAGTCACTTGTCGAGATTGGTGATAAAGATCCTTCTTTTATTGGGTCACGAGACTGGATTGGTGCCATTGAGTTGAGCTTTGTTTTGGACAAACTTCTGGGTGTTACTAGCAAAATCATTAATGTTAGATCTGGTGCTGAGCTTCCGGAAAAATGTCGAGAGCTAGCATTGCACTTCGAGACCCAAAGTACACCTGTTATGATTGGTGGTGGCGTACTTGCGTATACACTATTGGGAGTGGATTACAATGATGCAAGTGGAGATTGTGCATTTTTAATACTTGATCCACACTATACGGGTAACGAAGATCTGAAGAAAATAATCAATGGGGGATGGTGTGGGTGGAAAAAGGCTGTTGATAACAAGGGAAAAAATTTCTTCTTGCACGATAAGTTTTATAATCTACTGCTGCCACAGAGGCCCAACATGGTTTGA 1938 0.4319 MADDSIRSVTLLCPPKHPSKESDPGIHCWLIGSPFLPPLTIVSILRCIHTIPSSPSPDWRKESQDLKTLIPKGFELIGSLASGDDTIARAAIDAAREIRKLLYGEGTVEDQPLIGAVSSSDSGELQFFVSESGNASSRIEPVTSIIQEEHPEKFLWENGCLLRCELPIKLPIYYPLKNPTDIEKAYVQATEAVIAKLRDPQAVYMLETLSNTCPDQSPPAIVRGAQLDFHTGLSKTKPLAKGDKGSDASSLSCSYFSINNKAAFSIENADTIQVSILFNSLGPSSTSDAPIAEYLPVLEEARLVVVDIKLDVLCYSSKELPLKHAVSCLIIPSLTDQLNILQNFMLPNLLAQHPQLKPYHYSPPGVLHPITVFYELSFGETEMKQVEFRRSLHSRLGLPYDRPLLRIANALDFSKLKNSGTVSLQKGSTLLRDVHIGIPSSGVTGGTLSIVQGSYEYHHYLQDGFNDSGWGCAYRSLQTIISWFKLQNYSSIEVPSHREIQQSLVEIGDKDPSFIGSRDWIGAIELSFVLDKLLGVTSKIINVRSGAELPEKCRELALHFETQSTPVMIGGGVLAYTLLGVDYNDASGDCAFLILDPHYTGNEDLKKIINGGWCGWKKAVDNKGKNFFLHDKFYNLLLPQRPNMV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02812 645 SUPERFAMILY Cysteine proteinases 464 602 IPR038765 -
Trre5g02812 645 FunFam Probable Ufm1-specific protease 2 428 645 - -
Trre5g02812 645 Gene3D - 428 645 - -
Trre5g02812 645 PANTHER UFM1-SPECIFIC PROTEASE 2 70 645 - -
Trre5g02812 645 Pfam Peptidase family C78 448 637 IPR012462 -
Trre5g02812 645 ProSiteProfiles Rhodanese domain profile. 607 625 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02812 Trre-Chr5 22397890 22404628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02812 K01376 - gmx:100819651 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02812 5 22397890 22404628 Trre5g02812 5 22397890 22404628 ECH