LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02792	ATGGCTAGTACTAATCCTCGCCAGTTACAAGCTAACAAAATGCAGTTAAAGAAGGAGAGACGCATGTTCTCTACTTCTGATGATAGTGCCATGATGAAACAAGTTCAGTCCACTCATGCACCCGATGGTCGTGAAATTGATGTCAAACCCCTTATTCAAATTGTTGATGAAATATTGATTCAAATCATTGCACGAAGTGTTGAGGGTCATCAACATGATCATGTTAAACATGAGCAAGAGAAATTGGAAACTGCTGCTGCTTTGGCTGAATTTGATATGCTTGATGCGCTGGCTTTTATCATTAACAAAATTTCGTGTGAGCTAACATGCAAATGCTCAGGAGGTGGAGATGCACATGCATCAACAATGGTGTTACTAAATTACCTATCTAGCTATTCATGGCATGCAAAAGTTGTGTTAACCTTAGCAGCATTTGCTGTTATTTTTGGAGAATTTTGGCTTGTTGCTCAATCAAGTGTTTCAAACACACTTGCCAAATCTGTTGCTCTCCTTAAGCAACTACCTGACATAGTAGAGAATTCTGTTTCATTGAGACCACAATTTGATGCACTCAATAAGCTTGTGAAGGCTGCACTTGATGTTACTATGTGCATTGTTGAATTCAAAGAGTTACCATCTGAATATATTTCAGAAGATGTTCCTCCTATGTCTGTTGCAAGTGCTCATATTCCTATTGCTACCTATTGGGTCATTAGAAGTATTGTTGCTTGTGCCTCACAAATTGCTAGTCTCATAGGCATGAGAAATGAGGCCATTTCATCAGCCTCAGAAGCATGGGAATTATCTAGTCTGGCTCACAAGGTTACTAGTATATATGAGCACCTCAAGAACCAACTTGCTATTTGCTATCAATATATAGATGAAAAGAGGCATATTGAGGCATTTCACAATCTGATACGTCTTTTCGAGACGGTTCATGTAGACAACATGAAAATTCTGAGAGCATTGATTTATGCAAAGGATGATATTCCCCCACTTATAGATGGAACTACAAAATTAAGGGTTAGTCTTGAGGTACTAAGGAGGAAACATGTGTTACTTCTGATATCAGATCTTGATATTTCACTAGAAGAGATTATGATACTTGATAATTTGTACAAAGATGCAAGATCTAGAGGTGAGACACACTATGAGATGGTATGGATTCCAGTTGTGGACAAAGCAACATGGAATGAAGTGAATAAGCAAAAATTTGAGTATCTTCAATCATCAATGCCGTGGCACAGTGTTCGCGACCCTTTCATTATTGAGCCATCAGTGATTAAGTATATAAAAGAAGTGTGGAATTACACAAAAAGAGCTATTCTAGTTGCTCTTGATCCACAAGGCAGATTGTCCTCCCAAAATGCTCTTCACATGATATGGATTTGGGGAAATTTGGCCTTCCCTTTCACAAGTGAAAAAGAAGAATCATTGTGGAAGCAAGAGATTTGGAGCCTCGAGCTTCTTGTTGATGGCATTGATCCCGCACTTTTGGACTGGATGACAGAAGGAAAAATCATATGTTTATATGGAGGCGAAGATCTAGAGTGGATCGAAACATTCACAAAAACAGCAATGAGCGTAGCAAGAACTAGTAACTTCGATTTAGAGATGGTATACGTAGGAAAAAGCAATGCAAAAGAAAGAATGCAGAGGATGATAACCACATTCAACAATAAAAAATTCAGTTACTTTTTTCCAAATGTGACATCCATTTGGTTCTTTTGGGCAAGACTTGAGAGCATGCTGTACTCAAAATTACAACATGGAAGGACAGTCGAAAATGACAAGATCATGAGTGAAGTTATGACTGTACTAAGCTTCGACGGTAGTGATCGTGGTTGGGCAATATTCTGTAGAGGACCATCTGAAATGGCTAGAGCTAAAGGTGATACTGCTTTAACAAGTTTGAGAGATTTTGATAAATGGAAACATAAGATTGAACAAGATGGTTGGGTTCCTGCATTGAATGATTATATTAAGGAAATTCAGCAACCTCATCATTGTAATAGGCTTATTCTTCCTGGGAGTACTGGTGGAATACCACAGAAAGTTGTTTGTGCTGAATGTGGGCGCCAAATGGAGAAATATTTCATGTATCGTTGCTGCGTCGAGTGA	2121	0.3852	MASTNPRQLQANKMQLKKERRMFSTSDDSAMMKQVQSTHAPDGREIDVKPLIQIVDEILIQIIARSVEGHQHDHVKHEQEKLETAAALAEFDMLDALAFIINKISCELTCKCSGGGDAHASTMVLLNYLSSYSWHAKVVLTLAAFAVIFGEFWLVAQSSVSNTLAKSVALLKQLPDIVENSVSLRPQFDALNKLVKAALDVTMCIVEFKELPSEYISEDVPPMSVASAHIPIATYWVIRSIVACASQIASLIGMRNEAISSASEAWELSSLAHKVTSIYEHLKNQLAICYQYIDEKRHIEAFHNLIRLFETVHVDNMKILRALIYAKDDIPPLIDGTTKLRVSLEVLRRKHVLLLISDLDISLEEIMILDNLYKDARSRGETHYEMVWIPVVDKATWNEVNKQKFEYLQSSMPWHSVRDPFIIEPSVIKYIKEVWNYTKRAILVALDPQGRLSSQNALHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPALLDWMTEGKIICLYGGEDLEWIETFTKTAMSVARTSNFDLEMVYVGKSNAKERMQRMITTFNNKKFSYFFPNVTSIWFFWARLESMLYSKLQHGRTVENDKIMSEVMTVLSFDGSDRGWAIFCRGPSEMARAKGDTALTSLRDFDKWKHKIEQDGWVPALNDYIKEIQQPHHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02792	706	PANTHER	PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE	10	705	IPR039299	GO:0010088
	Trre5g02792	706	Pfam	Sieve element occlusion N-terminus	26	313	IPR027942	-
	Trre5g02792	706	Pfam	Sieve element occlusion C-terminus	475	704	IPR027944	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02792	Trre-Chr5	22241097	22244797	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02792	-		-	gmx:100811452	1181.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g02792	5	22241097	22244797	Trre5g02792	5	22241097	22244797	ECH