Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02789 ATGACTATTACGGTCCTGCCTACGATCAAGGATGACTGCCTTATGATCAGAGGTAACGTGATTCTTACACGTGTCCCCGAAAACATCGTTGTTTCTCCCGTTTCAACCGCCTCCGCTTTTTTAGGTGCAACTTCTCCAATTCCAAGTTCCCGTCACGTTTTCACTCTCGGTATTCTCCGGGGATATAGATTGTTATCTTTATTTAGAGTGAAAATATGGTGGATGATACCACGTGTAGGGACATCGGCAAGTGATGTTCCAATGGAAACTCAATTGCTACTACTGGAAGCAAGAGAAGAGTCTGCTCTTAAGGATGATTTTTCTTCTGATACTGAAGATCCAGAAGAAGTGAACACTTCCTACATTCTCTTCTTGCCTGTATTGGATGGAGCATTTCGCACAACTTTGCAAGGAACTGCATTAAACGAGCTCCAATTCTGTGTTGAAAGTGGAGATGCCTACGTTCAAACTTGTCAATCACTTGAAGCAGTATTTGTAAATTCTGGAGACAATCCATTTGAGCTAATAAGGGATTCTATCAAGATATTGGAGAAACATAACGGAACGTTCTGTCATCTTGAAAACAAGGAGATTCCTGTACATCTTGATTGGTTTGGATGGTGTACTTGGGATGCCTTTTACACTCAAGTAAATCCACAAGGAATAAAAGAGGGAATTCAAAGTCTCTCAACTGGAGGTTTTACACCAAAGTTTATCATAGTTGATGATGGATGGCAAGAGACTCTCAATGAGTTTTACAAAGAAGGCGAACCAATAATCGAAGGAACCCAGTTTGCTACAAGACTGATAGACATCAAGGAAAATAATTTGAGTGTAAAATACGTTTATATGTGGCATGCTTTAGCTGGTTATTGGGGAGGAGTACTTGCGTCTTCGGATGCGATGAAGAAATATAATCCAAAGCTTGTATATCCAATTCAGTCACCTAGTATCACAGGGAACCTTAGAGATATAGCCATGGATAGCTTGGAAAAATATGGAGTTGGAATCATAGACCCATCAAAGCTATATGACTTTTACAATGACTATCACAGTTATCTTGCTAGCTGCGGCGTCGATGGAGTCAAAGTAGATGTCCAAAATTTGATAGAAACTTTGGGTTCTGGGTACGGTGGACGCGTTTCATTAACCAAACTGTATCAAGAAGCATTAGAAACATCAATAGCTAAGAACTTCAAGGATAATAACCTCATTTGCTGCATGGCTCATAACTCTGATTCAATTTACAGTTCAAAGAAGAGTGCAGTAGCAAGAGCATCTGAGGATTTCATGCCAAGGGAACCAACATTTCAAACCTTGCACATTGCGTCGGTAGCTTTTAACAGTCTTCTTCTAGGGGAGATATTTGTGCCAGATTGGGACATGTTCCAAAGCAAGCACGAGACGGCTGAGTTCCATGCTGCAGCAAGAGCAATCGGTGGTTGTGCAGTATATGTTAGTGATAAGCCTAGCAATCATGATTTTAAAATCCTAAGGAAGCTAGTACTACCTAATGGATCAGTCTTGAGGGCAAGATATGCTGGCCGTCCTACTCGAGATTGTTTGTTTCAAGATCCTGTAATGGATGGAAAAAGTCTGCTGAAAATATGGAACTTGAATAAGCTGACCGGGGTGATAGGTGTCTTTAATTGCCAAGGAGCAGGAAGCTGGCCAATGAAACCATTAGAATCCACACCGACACGCTTAACCATTTCAGGGAAAATTAGAACAATTGATGTTGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGACTGCATATTATATGCCTTCAATGCAGGCTTGCTTTCCAAGCTACCAAGTAGAGGAAAACTAGAAGTGTCCTTGGAGACTCTTCAATGTGAAGTATATACAGTATCTCCGATTAGGGTATTTGGTCATGATGTGCAATTTGCACCAATTGGATTGCTTGACATGTACAATTCAGGAGGAGCTGTAGAAGAACTGTCCTGCACAATGAATGTTGCAAATTGCATAATAAAAATCAGAGGCAAAGGGTATGGCCGTTTTGGAGTTTACTCCAATGTTAGACCGCAAGGTTGCTTGGTGGACAAGAAGGAGGAGGAGTTTTTCTACAACTCTGAAGATGGATTATTGACAATTAATCTTGAAGGTGACAAAAATTCGAGGGACATAGAATTTGTATTCTGA 2178 0.4068 MTITVLPTIKDDCLMIRGNVILTRVPENIVVSPVSTASAFLGATSPIPSSRHVFTLGILRGYRLLSLFRVKIWWMIPRVGTSASDVPMETQLLLLEAREESALKDDFSSDTEDPEEVNTSYILFLPVLDGAFRTTLQGTALNELQFCVESGDAYVQTCQSLEAVFVNSGDNPFELIRDSIKILEKHNGTFCHLENKEIPVHLDWFGWCTWDAFYTQVNPQGIKEGIQSLSTGGFTPKFIIVDDGWQETLNEFYKEGEPIIEGTQFATRLIDIKENNLSVKYVYMWHALAGYWGGVLASSDAMKKYNPKLVYPIQSPSITGNLRDIAMDSLEKYGVGIIDPSKLYDFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLTKLYQEALETSIAKNFKDNNLICCMAHNSDSIYSSKKSAVARASEDFMPREPTFQTLHIASVAFNSLLLGEIFVPDWDMFQSKHETAEFHAAARAIGGCAVYVSDKPSNHDFKILRKLVLPNGSVLRARYAGRPTRDCLFQDPVMDGKSLLKIWNLNKLTGVIGVFNCQGAGSWPMKPLESTPTRLTISGKIRTIDVEFLEEVAGENWNGDCILYAFNAGLLSKLPSRGKLEVSLETLQCEVYTVSPIRVFGHDVQFAPIGLLDMYNSGGAVEELSCTMNVANCIIKIRGKGYGRFGVYSNVRPQGCLVDKKEEEFFYNSEDGLLTINLEGDKNSRDIEFVF 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02789 725 Pfam Raffinose synthase or seed imbibition protein Sip1 9 276 IPR008811 -
Trre5g02789 725 Pfam Raffinose synthase or seed imbibition protein Sip1 278 711 IPR008811 -
Trre5g02789 725 PANTHER - 271 716 IPR008811 -
Trre5g02789 725 SUPERFAMILY (Trans)glycosidases 201 509 IPR017853 -
Trre5g02789 725 Gene3D Aldolase class I 203 504 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02789 Trre-Chr5 22223768 22228279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02789 1 712 Glycoside Hydrolase AT1G55740 47.278 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02789 - - gmx:100816978 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02789 5 22223768 22228279 Trre5g02789 5 22223768 22228279 ECH