Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02785 ATGGGTGGATCACATTCAAAACGGAGGAGCTCTAGGCACCGTTCTTCATCGTCAAGATCGAATCCATTGTTTCCGCAGTATCAATCACCTTATTTGCCACAAACACAAGATCATGGAGCAATGGGGTATAATTATGGTGCTCCACCTCCACCTCAAAGCTATGGTGGTGATGGTGGTCAACAAAGCAAGAGATCAGATAAGAAGTATACAAGGATAGATGATAACTATAATAGTTTGGAACAGGTAACTGAAGCTCTAGCAAGTGCTGGCCTAGAGTCTTCCAATCTCATTGTTGGTATCGATTTTACAAAGAGCAATGAGTGGACAGGTGCAAGGTCATTCCAAAGAAGATGCCTGCATCACATTGGGCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGAAAAACATTGTCTTCCTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTCGGAGATGCGTCAACACATGACCAGGAAGTTTTTAGTTTCAACGATGATGATAGATTTTGTCATGGATTTGAAGAAGTGCTGTCACGGTATAGGGAATTGGTTCCTCAATTAAGGCTTGCAGGACCCACATCATTTGCCCCAATCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGAAGGCCAATACCATGTTTTATTGATTATAGCAGATGGGCAGGTGACAAGAAGTGTTGACACTGATCATGGACAATTGAGTGCACAAGAAAAGAAAACTGTGGAAGCTATTGTAAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTCGGAGATGGGCCATGGGACATGATGAAACAATTTGATGATAACATACCTGCTCGAGCATTCGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACACAGATCGGTCTAGAAAGGAAGCCGAGTTTGCCCTCTCTGCCTTGATGGAAATACCTTCCCAGTACAAGGCAACACTAGAACTTAATATATTGAGCAATCGTAGAAGGAACGGCGATATACACAGGATTCCTCTACCACCACCTCAATATGGCGCATCATCATTCAACACCCCAAAAGTTTCCCATCAAAACAGTTTTCGCCCCAGTGCACCGTCTCAAAAACATAATGTTGGCACGAACCCCCATGCAAGCTCTGCTTCTGATAATCAGTTTTGTCCCATTTGCCTCACCAATCCGAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGCGAGTGCGGCCAAGATCTTCAGTTATGCCCTATTTGCAGGAGTAGCATTGATACTAGAATAAAGCTTTATTAG 1308 0.4228 MGGSHSKRRSSRHRSSSSRSNPLFPQYQSPYLPQTQDHGAMGYNYGAPPPPQSYGGDGGQQSKRSDKKYTRIDDNYNSLEQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNDDDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPIIEMAITIVEQSEGQYHVLLIIADGQVTRSVDTDHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNTDRSRKEAEFALSALMEIPSQYKATLELNILSNRRRNGDIHRIPLPPPQYGASSFNTPKVSHQNSFRPSAPSQKHNVGTNPHASSASDNQFCPICLTNPKDMAFGCGHQTCCECGQDLQLCPICRSSIDTRIKLY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02785 435 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g02785 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 435 IPR013083 -
Trre5g02785 435 PANTHER COPINE FAMILY PROTEIN 1 10 412 - -
Trre5g02785 435 Gene3D von Willebrand factor, type A domain 91 309 IPR036465 -
Trre5g02785 435 SUPERFAMILY vWA-like 94 277 IPR036465 -
Trre5g02785 435 Pfam Zinc finger, C3HC4 type (RING finger) 389 430 - -
Trre5g02785 435 Pfam Copine 118 332 IPR010734 -
Trre5g02785 435 MobiDBLite consensus disorder prediction 1 65 - -
Trre5g02785 435 MobiDBLite consensus disorder prediction 339 386 - -
Trre5g02785 435 SMART VWA_4 93 296 IPR002035 -
Trre5g02785 435 MobiDBLite consensus disorder prediction 350 386 - -
Trre5g02785 435 ProSiteProfiles Zinc finger RING-type profile. 392 425 IPR001841 -
Trre5g02785 435 MobiDBLite consensus disorder prediction 16 35 - -
Trre5g02785 435 SUPERFAMILY RING/U-box 386 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02785 Trre-Chr5 22214679 22219198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02785 K16280 - gmx:100809850 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02785 5 22214679 22219198 Trre5g02785 5 22214679 22219198 ECH