Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02752 ATGTTGAAAAAGTTTTATGTATGTGTATTGGAAGCCAAAGACTTACCCATCAAGAATTCTCGTGTGAAGCTTCAACTTGGAAAGTTTAAGTATAAAACAAGGTTATCGAGAAACACGTTCAATCCAATTTGGAACGAGGAATTTGTTTTCAAGGTGAAGGATATTGCAGAGGAAGTTCTTGTTGCCACTGTTGTTAATGATGAATTAAAGGTGATTAATGGTGATGTAGTGGATTTTGTCGGTCAAGTACGGATTCCGGTTGGTTTTGATCAGAATAGTAACAAGCAAATATTGCCACCGACGTGGTTCTCCCTTCAATGTTCTAACAAGAGTGCCAGATTTTTCAACAAATTTTGTGGGAAGATTCTCCTTACAATTTCTCTTCATTGTAAAAGTCATGCTTCTTTGATGAATCATAAGCATTCTCCAAACTCAACTATTGCAATTGTGAACTCGACAACAGACTTGGAAGATCTTCACACTTCATCTCCGCCATCTTTTCGTAAAGTTCGAAAAATGGGCGAAGGCAAACAGTTGTTGAAGGTTATTGCTAATCGTCTAGATAGGATTTTTAATAAAAAGGAACGGAACTCAAAATCAGCAGATTGTTCAGAAACATCAAACTCATTATCTGATTATGAAGATAGTGTAGAAGAAAATTCACCCCCCTGTAGCTTTGAAGAAGGCATTGCAGTAATGGAATCAAGAGATAACCAACCAGAAAGTCCTGAAAATTTGCCGGGTGGTGTTCTAGTAGATAAAATTTATGCAGTATCTCCATACAATCTTAATGTGGTTCTTTTCGCACCGAATTCTCAGTTTAGGACAGATTTGGCAGATTTACAAGGGACAACAAATTTGCAAGAAGGGGCTTGGTTCTGGAAAGGTGAAGACATGTCGTGTTTGACTCGAGTTGTTACCTATACAAAAGCTGCTTCAAAATTAGTCAAGGCTGTTATTGCCACTGAGGAGCAAACCTATATTAGAGTGACCAAAGATGAATTTGTTATACTTGTTAGTGTATGCACCCCTGATGTTCCATATGGGAATACATTTCGGGTCGAATTGCTTTACAAGATAATGCCTGGAGAAGAGGTGTCTTCTGGGGATGAATCCTCACATCTTGTGATATCATGGGGAATTGTCTTCCTACAAAGCACAATGATGAAAGGTATGATAGAGAGTGGAGCTAGACAAGGTTTGAAGGAGAGTTTTGATCAGTTTTCTAACCTACTTGGTCAAAGTTTCAAGGTGCTAGATAAGCAGGATTTGATAAACAAAGAACACTTGTTGTCAACTTTGCATACAGAAAGCCAGTGGAATTGGTGGCAGGCTATTGCATACTTCTGGAATTTCACAGTAGTTTCCACAATTTTTATGGTTTTGTATTTTTTGCTGCATATTTTAAGGTGTGGTCCAAGTCAACCTCAGGGCTTGGAGTTTCGCGGGATTGAACTTCCAGATAGCTTAGGAGAGCTAGTTACAAGTGGAATTTTAGTTATCCAGTTGAAACGTGTTTATCATATGGTAGCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCACGGCATGAAAGCACATGGTGATGGATGGGTTGTTACTGTAGCTTTAATTGAGGGGGTTGACCTGGCATCATTGGAGTCAACAGGCTTGTCAGATCCCTATGTGGTTTTCACCTGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTGATACATCAGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCGCCATCGGTTTTACATGTGGAAGTTTTTGATTTTGATGGTCCATTTGATCAAGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAACACACATCAACAGATATGGCAGACATGTGGGTCATGCTTGAAGGTAAGCTCGCACAATCTGCTCAATCAAAGCTGCATTTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAAACGATCAAGGATTACTTGGAGAAGAAGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTCCATCACCTCAAAGGAATTCTACATTCCAGAAACTGTTTGGATTGCCTCCAGAAGAGTTCCTAATCAATGATTTCACATGTTCCCTGAAGAGAAAAATGCATTTACAGGGTCGGCTATTTCTTTCGGCAAGGATTGTAGGATTTTATGCAAATTTATTTGGACATAAAACCAAATTTTTCTTCCTATGGGAAGATATTGAAAACATTCAAGTGCTTCCTCCATCATTAGCATCATTAGGAAGCCCTACATTGGTCATAATTCTTCGAAGAGGAAGAGGTGTCGATGCAAGGCATGGTGCCAAGTCACAAGATGAAGAAGGAAGGCTTAGGTTTCATTTTCAGTCGTTTGTTTCGTTCGGTTCTGCATCCAGAACAATAATGGCCTTGTGGAGAACAAGAATTCTGAACCCTTATCAGAAAGAACAAATTACAGAGGAGCATGAAGATCAAGAAGTCTTGGTAATGCCTGATGACTCTGGATCTATCCTAGAGGATGAAGCAAAAATGTCCATTATTTACTCTGCTGAACTGCCAATTAAGATGGGATTAGTGATGGAAATTTTTGAGGGAGGAAACCTAGAGCATAAGATTATGAAGAGAAGTGGTTGTCTGGACTATGACACTACACCCTGGGAACCAGTAAAACCTGATGTCCGCGAAAGGCGTGTTTCGTATCAATTTAATCGACATTTGTCGGTATTTGATGTCACAAGTACACAACAGAAGTTTCCAAATACAATCACAGGAGGTTGGATTGTGAATGAAGTTATGGTCCTTAATGGTGTCCCATTTTCTGATCACTTCCGTGTATGTTAA 2853 0.3915 MLKKFYVCVLEAKDLPIKNSRVKLQLGKFKYKTRLSRNTFNPIWNEEFVFKVKDIAEEVLVATVVNDELKVINGDVVDFVGQVRIPVGFDQNSNKQILPPTWFSLQCSNKSARFFNKFCGKILLTISLHCKSHASLMNHKHSPNSTIAIVNSTTDLEDLHTSSPPSFRKVRKMGEGKQLLKVIANRLDRIFNKKERNSKSADCSETSNSLSDYEDSVEENSPPCSFEEGIAVMESRDNQPESPENLPGGVLVDKIYAVSPYNLNVVLFAPNSQFRTDLADLQGTTNLQEGAWFWKGEDMSCLTRVVTYTKAASKLVKAVIATEEQTYIRVTKDEFVILVSVCTPDVPYGNTFRVELLYKIMPGEEVSSGDESSHLVISWGIVFLQSTMMKGMIESGARQGLKESFDQFSNLLGQSFKVLDKQDLINKEHLLSTLHTESQWNWWQAIAYFWNFTVVSTIFMVLYFLLHILRCGPSQPQGLEFRGIELPDSLGELVTSGILVIQLKRVYHMVAHFVQARFQMGTDHGMKAHGDGWVVTVALIEGVDLASLESTGLSDPYVVFTCNGQTRSSSVKLDTSDPQWNEILEFDAMEEPPSVLHVEVFDFDGPFDQDVSLGHAEINFLKHTSTDMADMWVMLEGKLAQSAQSKLHLRIFLDNNKGVETIKDYLEKKEKEVGKKLNLPSPQRNSTFQKLFGLPPEEFLINDFTCSLKRKMHLQGRLFLSARIVGFYANLFGHKTKFFFLWEDIENIQVLPPSLASLGSPTLVIILRRGRGVDARHGAKSQDEEGRLRFHFQSFVSFGSASRTIMALWRTRILNPYQKEQITEEHEDQEVLVMPDDSGSILEDEAKMSIIYSAELPIKMGLVMEIFEGGNLEHKIMKRSGCLDYDTTPWEPVKPDVRERRVSYQFNRHLSVFDVTSTQQKFPNTITGGWIVNEVMVLNGVPFSDHFRVC 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02752 950 Gene3D C2 domain 518 653 IPR035892 -
Trre5g02752 950 MobiDBLite consensus disorder prediction 202 218 - -
Trre5g02752 950 MobiDBLite consensus disorder prediction 198 224 - -
Trre5g02752 950 Pfam GRAM domain 687 757 IPR004182 -
Trre5g02752 950 ProSiteProfiles C2 domain profile. 514 633 IPR000008 -
Trre5g02752 950 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 136 IPR035892 -
Trre5g02752 950 Pfam VAD1 Analog of StAR-related lipid transfer domain 251 400 IPR031968 -
Trre5g02752 950 Pfam VAD1 Analog of StAR-related lipid transfer domain 851 949 IPR031968 -
Trre5g02752 950 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 533 658 IPR035892 -
Trre5g02752 950 CDD C2 535 635 - -
Trre5g02752 950 Gene3D C2 domain 3 126 IPR035892 -
Trre5g02752 950 PANTHER BNAA05G37250D PROTEIN 4 949 IPR044511 -
Trre5g02752 950 Gene3D - 684 811 IPR011993 -
Trre5g02752 950 Pfam C2 domain 4 89 IPR000008 -
Trre5g02752 950 Pfam C2 domain 534 633 IPR000008 -
Trre5g02752 950 SMART C2_3c 4 102 IPR000008 -
Trre5g02752 950 SMART C2_3c 534 632 IPR000008 -
Trre5g02752 950 SMART gram2001c 686 752 IPR004182 -
Trre5g02752 950 CDD C2 5 105 - -
Trre5g02752 950 ProSiteProfiles VASt domain profile. 247 420 IPR031968 -
Trre5g02752 950 ProSiteProfiles VASt domain profile. 847 950 IPR031968 -
Trre5g02752 950 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02752 Trre-Chr5 21950904 21956704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02752 7 145 Lipid Metabolism Gene Families AT1G04150 26.752 2.62e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02752 - - gmx:100811103 1439.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02752 5 21950904 21956704 Trre5g02752 5 21950904 21956704 ECH