Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02736 ATGGGAAGCGGTGAAATGGGAGTTGCAGAGAGCGGTGGCGCTTCACTACCATCCGTCGGCGCCGACGCAACCAAACGAAGAGTAACATACTTCTACGAACCAACCATCGGAGATTATTACTACGGTCAAGGTCATCCAATGAAACCTCACAGAATCCGAATGGCTCACAATCTCGTCATTCACTACGCTCTTCACCGTCGTATGCAAATCAACCGTCCTTTCCTCGCCGCACCTGAAGATATCCGCCGTTTTCACTCCGACGAATACGTCGATTTTCTTTCTTCCGTTTCTCCTGAGATCCTTTCCGAGAGTTCTCACTCTCACTATCGGCAGTTGAAGCGGTTCAATGTTGGTGAAGATTGTCCCGTTTTTGACGGTCTTTTCCCTTTCTGTCAAGCATCTGCTGGCGGATCTATTGGTGCTGCTGTTAGGCTTAACCGTGGTGATGCTGATATTGCTATCAATTGGGCTGGTGGTTTGCATCATGCTAAGAAAGCTGAAGCTTCTGGATTTTGCTATGTTAATGACATTGTTCTTGGTATTCTCGAGCTTCTCAAAGTTCATAGGCGTGTCCTGTATGTTGATATTGATGTCCACCATGGAGATGGCGTTGAGGAGGCATTTTACACCACTGATAGAGTGATGACAGTGTCTTTTCACAAGTTTGGCGATTTTTTCCCGGGAACTGGGCATATTAAAGACACTGGAGTTGGCCCTGGAAAGGATTATGCTCTAAATGTTCCTTTGAATGATGGAATGGATGATGAAAATTTCCGTGCTCTGTTCCGTCCCATCATGCAAAAAGTCATGGATGTTTATAAACCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGTTGCTTTAACCTGTCTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTGAGGTCTTTCAATGTTCCTCTAATGGTCTTGGGCGGTGGAGGATACACAGTACGGAATGTTGCTCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTAGCAATAAGTTGCCATACAATGAGTATTATGAATATTTTGGCCCAGACTACACACTTCATGTCGAACCAAACAACATGGAGAACCTAAACACAGCCAAGGATATGGAAAAAATTAGGAACACTTTACTTGAACAAATTTCCAGACTTCCTCATGCACCCAGTGCTCCTTTTCAGACAACACCATCAACCACAGAAGTTCCAGAAGAGGAAGAAGAGGACATGGATAGAAGGCCAAAACGTCGTATATGGAGTGGTGATGATTATGAGTCTGATCCTGATGAAGTTGTTGAAGATGAGAAGGCCAATACAAAGAACTCAAATTTAACTGCACATATGAGGCACACAACTGATGACATGGAAGAAGATAAGCCAGAAGTTAAGCATGATGTGCATTCGTCGTGCTAA 1440 0.4479 MGSGEMGVAESGGASLPSVGADATKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVIHYALHRRMQINRPFLAAPEDIRRFHSDEYVDFLSSVSPEILSESSHSHYRQLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGPGKDYALNVPLNDGMDDENFRALFRPIMQKVMDVYKPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGPDYTLHVEPNNMENLNTAKDMEKIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEDMDRRPKRRIWSGDDYESDPDEVVEDEKANTKNSNLTAHMRHTTDDMEEDKPEVKHDVHSSC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02736 479 Pfam Histone deacetylase domain 45 338 IPR023801 -
Trre5g02736 479 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Trre5g02736 479 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Trre5g02736 479 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Trre5g02736 479 CDD HDAC_classI 31 340 - -
Trre5g02736 479 MobiDBLite consensus disorder prediction 417 433 - -
Trre5g02736 479 MobiDBLite consensus disorder prediction 456 479 - -
Trre5g02736 479 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 FunFam Histone deacetylase 24 405 - -
Trre5g02736 479 MobiDBLite consensus disorder prediction 394 479 - -
Trre5g02736 479 Gene3D Histone deacetylase domain 17 406 IPR037138 -
Trre5g02736 479 SUPERFAMILY Arginase/deacetylase 26 393 IPR023696 -
Trre5g02736 479 PIRSF HDAC_I_euk 12 476 IPR003084 GO:0004407|GO:0016575
Trre5g02736 479 PANTHER HISTONE DEACETYLASE 2-RELATED 19 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02736 Trre-Chr5 21785851 21789948 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02736 K06067 - gmx:100801159 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02736 5 21785851 21789948 Trre5g02736 5 21785851 21789948 ECH