Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02729 ATGGCACCACCAAGCATAACAAAAACTGTAACACCCCTAAACATAATTGGCCTTGTCGACATGACTAATCCACCACCCTTATCTATAACCTTAGACCAATCATGTTTTCTCGCAAATGGCCACCCTTTTCTCACCCAAGTCCCAACCAACATAACAACAACAACAACAACAACCACTTTTCTCAATTCACAATCCAACAAAGACAACACCACCACCTTACAACAAGGTTGTTTCGTTGGGTTCAACACTACTGAACCCAAAAGCCGCCACGTAGTTCCACTTGGCAAACTAAAAGGAATCCGGTTCATGAGCATTTTCCGGTTTAAAGTATGGTGGACAACTCACTGGACCGGAACAAACGGACACGAATTAGAACACGAAACACAAATCTTAATCCTAGACCAAAACAACTCCATCGGTCGACCCTATGTTTTACTTCTCCCAATCATCGAAAACTCTTTCCGAACCTCACTCCAACCCGGTTCAAACGATTACATTGACATGTGTATCGAATCCGGTTCGACACGTGTCACTAATTCACAATTTAAAACATGTCTTTACATCCACGTCAGCAATGACCCATACCGTTTAGTAAAAGAAGCAGTGCATTTAATACAAACCCATTTAGGAACATTCAAGATTCTTGAAGAAAAAACACCACCGAGTATTATTGATAAATTTGGTTGGTGCACGTGGGATGCGTTTTACTTGAAGGTACACCCAAAAGGTGTAAGGGAAGGTGTTAAGGGTCTTACAGAGGGTGGGTGTCCTCCAGGTTTAGTATTAATTGATGATGGTTGGCAGTCCATTTGTCATGATGATGATCCAATTACTGACCAAGAAGAAGGTATGAACCGAACCTCAGCTGGAGAACAAATGCCATGTAGGGATTTGAAGGAAGAGTTTAAGAGTGTGGAGAATGTTTATGTTTGGCATGCACTTTGTGGGTATTGGGGTGGGATTAGACCTAAAGTGGTTGGAATGCCCGAAGCTAAGGTTGTTACTCCGAAGCTGTCTCCGGGGCTGAAGATGACAATGGAGGATTTAGCGGTGGATAAGATTGTTAATAATGGTGTGGGCTTAGTGCCGCCAAATTTGGCCCAAGATATGTATAATGGGCTTCATTCTCATTTACAAGAGGCGGGAATTGACGGTGTTAAGGTTGACGTTATACATTTGCTTGAGTTACTATCGGAGGAATATGGTGGGCGCGTTGAGCTTGCAAAAGCTTATTACAAAGCACTAACCTCATCAGTGAAGAAACATTTCAAAGGAAATGGAGTAATTGCAAGCATGGAGCATTGCAACGACTTTTTTCTCCTCGGCACAGAAGCCATATCCCTCGGACGTGTAGGAGATGATTTTTGGTGCTCTGATCCATCTGGTAATCCAAATGGTACATATTGGCTCCAAGGTTGTCACATGGTACATTGTGCCTACAACAGTTTATGGATGGGAAATTTTATTCAACCAGATTGGGACATGTTTCAATCAACTCATCCTTGTGCTGAATTTCATGCTGCCTCTAGAGCCATCTCTGGTGGACCTATTTATGTTAGTGATTGTGTTGGTAATCACAATTTCAAGTTGCTTAAAACTCTTGTTTTGCCTGATGGTTCTATCTTGCGTTGTCAACATTATGCACTCCCGACACGAGATTGCTTGTTCGAAGACCCTTTACATGATGGCAAAACAATGCTTAAAATTTGGAATCTCAACAAATACGCTGGCGTATTGGGCCTATTCAACTGCCAAGGTGGTGGGTGGTGTCCTGTGACACGGCGAAACAAGAGTGCATCGGAATTTTCACACTTGGTGACATGTTATGCAAGTCCTAAAGATATTGAATGGTGCAATGGAAAAACACCAATGTGCATCAAAGGTGTGGATGCGTTTGCTGTGTATTTCTTCAAGGAGAAGAAACTGAAGCTGATGAAGTGTTCGGATAAATTGGAAGTATCGCTCGAGCCATTTAGTTTTGAGTTAATGACAGTGTCTCCGGTGAGAGTGTTTTCGAAAAGGTTGATTCAGTTTGCTCCAATTGGGTTAGTGAACATGCTTAACTCCGGCGGTGCGGTTCAGTCTCTTGAGTTTGATGATCATGAAATTTTGGTAAAAATTGGGATGAGGGGTTGTGGTGAGATGAGTGTGTTTGCATCAGAGAAACCAGTTTGCTGCAAAATTGATGGAGTGGCTGTGAAATTTGATTATGTGGACAAAATGGTGAAAGTCCAAATTTCGTGGCCTAGTTCTTCAACTCTGTCTTTGGTTGAGTTTGTATTTTGA 2286 0.4221 MAPPSITKTVTPLNIIGLVDMTNPPPLSITLDQSCFLANGHPFLTQVPTNITTTTTTTTFLNSQSNKDNTTTLQQGCFVGFNTTEPKSRHVVPLGKLKGIRFMSIFRFKVWWTTHWTGTNGHELEHETQILILDQNNSIGRPYVLLLPIIENSFRTSLQPGSNDYIDMCIESGSTRVTNSQFKTCLYIHVSNDPYRLVKEAVHLIQTHLGTFKILEEKTPPSIIDKFGWCTWDAFYLKVHPKGVREGVKGLTEGGCPPGLVLIDDGWQSICHDDDPITDQEEGMNRTSAGEQMPCRDLKEEFKSVENVYVWHALCGYWGGIRPKVVGMPEAKVVTPKLSPGLKMTMEDLAVDKIVNNGVGLVPPNLAQDMYNGLHSHLQEAGIDGVKVDVIHLLELLSEEYGGRVELAKAYYKALTSSVKKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCSDPSGNPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGNHNFKLLKTLVLPDGSILRCQHYALPTRDCLFEDPLHDGKTMLKIWNLNKYAGVLGLFNCQGGGWCPVTRRNKSASEFSHLVTCYASPKDIEWCNGKTPMCIKGVDAFAVYFFKEKKLKLMKCSDKLEVSLEPFSFELMTVSPVRVFSKRLIQFAPIGLVNMLNSGGAVQSLEFDDHEILVKIGMRGCGEMSVFASEKPVCCKIDGVAVKFDYVDKMVKVQISWPSSSTLSLVEFVF 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02729 761 SUPERFAMILY (Trans)glycosidases 222 544 IPR017853 -
Trre5g02729 761 PANTHER - 31 759 IPR008811 -
Trre5g02729 761 Gene3D Aldolase class I 219 535 IPR013785 -
Trre5g02729 761 Pfam Raffinose synthase or seed imbibition protein Sip1 296 745 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02729 Trre-Chr5 21705909 21710377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02729 1 761 Glycoside Hydrolase AT5G40390 60.826 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02729 K06617 - gmx:100800308 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02729 5 21705909 21710377 Trre5g02729 5 21705909 21710377 ECH