Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02469 ATGCCAAGCAAACTAAGGAATGCAATTGGAGCAGTAAAAGACCAAACAAGCATTAGCCTAGCAAAGGTAACAAATGCAGCAAATCTTGAGGTAACAATTCTTAAAGCAACAACACATGATAAAAATCCAATTGAAGAACGTTATGTGCATGAAATTGTGAACATGGTATCTTCAAACAAAGCATATGCTGCTGCATGTGCACAATGTATAGGCAAAAGAATTGGCAAAACAAGAAATTGGGTTGTAGCCCTTAAATCTCTTATGATTGTCCTTAGAATTTTCCAAGATGGTGATCCATATTTTCCTAGAGAAGTTTTTCATTCAATGAAAAGGGGTGCTAAAATTCTCAACCTTTCAAGTTTTAAAGATGATTCAAATTCTAGTCCTTGGGATTACACTGCATTTATAAGAACATTTGCTTTGTACCTTGATGAACGTTTAGATTGCTTCCTAACAGGAAAGCTCCAACGACGATTCACGTACCATACGCGGTTTCATGAAAAAAGGCAAAGGAATGAACCTGGTATTAGAGACATGAAACCTACATTGATTCTTAATAGAATCACTTATTGGCAAAAGTTGTTGGATAGAGCTATTGGCACTAGACCGACCGGTTCGGCCAAGAACAATCGGTTGGTTCAAATTTCTCTTTATGCTATTGTTCAAGAAAGTTTTGATCTTTACAAAGATATCTCTGATGGACTTGGTGTTGTTTTGGATAATTTCTTCAATTTACCACTTTCAGCATGTGTTACTGCATTCAATGCATGTGTCAAATCATATAAACAATTTGATGAGTTATCTGCCTTTTATTCATTTTGTTTAAGCATTGGAATTGGAAGATCCTATGAGTATCCAACTGTTCAAAAAGTTTCTGAAGAGCTTATGGAGACATTACAAGCTTTCTTGAAAGATCAAGCTTCTTTCCATACAATTAATAATAATAGTTCTAAACATTTTATTGTTTCTGGACATAAAAATTCTAATTCTAATGCATCATGTTCAAGTTCATCTCAAAATGATTTAGGTATTGAAAGATGTGGAACACTTGAAAGATTTTTTGAAAATGGTTCTGAGTTTGGTTCTCAATGTACATCATTGGAAGATCTAATGAGTGCTACCGATGCTGCTGGGAGTTCACGCGATTCTTTGGAACATGATACGTGTTCCGAGGAATCCGATGAAAATGAGAAAAAATCATCACAATATTATGATGATGAGTTTACTAGTGCTAATGGTTCTTGTTCTACTAGATCATTTTCAATTGATCATAATTCAAGGTCAAGTCTTGATATAATAAGTGTTGATGATATACATCATGATCAAGTGTTGCAACATAATCAAACAAATGAACATAAATTACAAAACATAAAAGGTGGCTCAAATTCCAATGATAGTTCCAAAGATTGTTGGGAAATAGTGTTGGCAAAGACAGTAGTAAGTACTAATGAAACACCATCACCTAAATTGGATAATGGAATTGACCCTTTTCTCAATTTATTTGATCAAGCTTTAGTACCTCAACAAAAATACAATCCTTTTCTTGATGATGTTGGAACTTTAGATCCTCATCATGCCACTACTAGTGCTAGTTTTGATGATATTTTTGATGCATCACTATCACCAACATTTAAGGCAACAACATCACCAACTTTTAAGGCAACAACATCACCAACCTTAAAGGCTCGTGACCCTCTTGCATTAACTGTCTCTAATCAAAATTCCAATCCTTCAACAAATTTGGATCTTATTTTTGGTGACATATATTCAAATGACACAACAATGGCCCCAAGTTTTGAGGCTCAAAATTCTCTTCAAATGATTGTGGCACCAAGTTTTGAGGCTCAAAATTCTTTTAAGAATGTTTCAACACCAACTTTTCAAGTGCATAATTCAAATGATAATGCCATAGTAGAATCACCAATCTATACTATTGAAAATCCAAATACTAGTATTGTTCCTTTTGATCCATATAGTAATTTTTTTGATTCAACAGTGACACCAACATTTAGTGCAAATGGTGGTAATGAAACAACATTGCCAACACAAACAAAAGAAGATGATCCATTTGGGCCATGGCCTAATGCAACGACACACGATCAAACATCTAATGTGTCATCGATGCAAGATCAAACTTTGTTGCGGCTTCAACAACTGTGGTTGGAACAACAAAACAAGATTATAGAAAAGCATATGACTTGA 2202 0.3438 MPSKLRNAIGAVKDQTSISLAKVTNAANLEVTILKATTHDKNPIEERYVHEIVNMVSSNKAYAAACAQCIGKRIGKTRNWVVALKSLMIVLRIFQDGDPYFPREVFHSMKRGAKILNLSSFKDDSNSSPWDYTAFIRTFALYLDERLDCFLTGKLQRRFTYHTRFHEKRQRNEPGIRDMKPTLILNRITYWQKLLDRAIGTRPTGSAKNNRLVQISLYAIVQESFDLYKDISDGLGVVLDNFFNLPLSACVTAFNACVKSYKQFDELSAFYSFCLSIGIGRSYEYPTVQKVSEELMETLQAFLKDQASFHTINNNSSKHFIVSGHKNSNSNASCSSSSQNDLGIERCGTLERFFENGSEFGSQCTSLEDLMSATDAAGSSRDSLEHDTCSEESDENEKKSSQYYDDEFTSANGSCSTRSFSIDHNSRSSLDIISVDDIHHDQVLQHNQTNEHKLQNIKGGSNSNDSSKDCWEIVLAKTVVSTNETPSPKLDNGIDPFLNLFDQALVPQQKYNPFLDDVGTLDPHHATTSASFDDIFDASLSPTFKATTSPTFKATTSPTLKARDPLALTVSNQNSNPSTNLDLIFGDIYSNDTTMAPSFEAQNSLQMIVAPSFEAQNSFKNVSTPTFQVHNSNDNAIVESPIYTIENPNTSIVPFDPYSNFFDSTVTPTFSANGGNETTLPTQTKEDDPFGPWPNATTHDQTSNVSSMQDQTLLRLQQLWLEQQNKIIEKHMT 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02469 733 CDD ANTH_N_AP180_plant 29 150 - -
Trre5g02469 733 SMART enth_2 27 157 IPR013809 -
Trre5g02469 733 SUPERFAMILY GAT-like domain 173 301 - -
Trre5g02469 733 MobiDBLite consensus disorder prediction 669 705 - -
Trre5g02469 733 MobiDBLite consensus disorder prediction 380 404 - -
Trre5g02469 733 ProSiteProfiles ENTH domain profile. 21 157 IPR013809 -
Trre5g02469 733 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 573 IPR045192 GO:0048268|GO:0072583
Trre5g02469 733 MobiDBLite consensus disorder prediction 669 685 - -
Trre5g02469 733 SUPERFAMILY ENTH/VHS domain 28 150 IPR008942 -
Trre5g02469 733 FunFam Clathrin coat assembly protein 2 153 - -
Trre5g02469 733 Pfam ANTH domain 29 305 IPR011417 GO:0005543
Trre5g02469 733 MobiDBLite consensus disorder prediction 375 405 - -
Trre5g02469 733 FunFam putative clathrin assembly protein At2g25430 170 315 - -
Trre5g02469 733 Gene3D - 2 155 IPR008942 -
Trre5g02469 733 Gene3D ANTH domain 167 318 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02469 Trre-Chr5 19242743 19244944 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02469 - - mtr:120579718 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02469 5 19242743 19244944 Trre5g02469 5 19242743 19244944 ECH