Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02411 ATGACATCATCCACCACCATTCCTCATCTTCCTCCGCCAGAAGACCGCCCTGTTCGTGTCTACGCCGATGGCATCTACGATCTATTCCACTTCGGTCACGCTCGTTCCCTTGAACAAGCCAAGAAATCATTTCCGAATACGTATCTTCTTGTTGGATGTTGCAGCGACGCCGTTACACATAAATATAAAGGAAAAACCGTTATGACTGAGGATGAACGTTATGAATCTCTCCGTCACTGCAAATGGGTGGATGAAGTGATCCCTGGTGCACCTTGGGTTATCAATCAAGAGTTTCTAGATAAACACAAAATTGATTTTGTAGCTCATGATTCTCTTCCATATGCTGATACTAGTGGTGCTGCAAATGATGTTTATGAATTTGTTAAGGCAGTTGGAAGATTTAAGGAAACACAACGGACTGAAGGTATATCTACATCAGATATAATAATGAGGGTTGTCAAAGACTATAACCAGTATGTGCTACGTAACTTGGATCGTGGGTACTCAAGAAAAGATCTCGGTGTGAGCTACGTTAAGGAAAAGCGATTGCGTGTGAATAGGAGACTGAAAACTTTGCAAGAGAAAGTAAAGGAACAACAAGAAAAGATCCAAACTGTTGCAAAGAATGCCGGTATGCATCGGAATGAGTGGGTGGAAAATGCTGATCGTATGGTTGCTGGATTTCTAGAAATGTTTGAAGAAGGTTGCCATAAAATGGGGACTGCCATATGTGATCGAATTCAAGAAAGTTTAAGAGGTCAGCAATCAAATGATGATTCAATTCTTCTTCAAAATGGCAAGGATGATGACGATGAAGAGTATTATGATGATCATGAGGAGGATAGTGATGAAGAATATTTTGAAGAATATTTTGATAACGATGAGCTTAATACCCAGATTAATGGGAAAGACATGAACAAAACGTAA 927 0.4002 MTSSTTIPHLPPPEDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDAVTHKYKGKTVMTEDERYESLRHCKWVDEVIPGAPWVINQEFLDKHKIDFVAHDSLPYADTSGAANDVYEFVKAVGRFKETQRTEGISTSDIIMRVVKDYNQYVLRNLDRGYSRKDLGVSYVKEKRLRVNRRLKTLQEKVKEQQEKIQTVAKNAGMHRNEWVENADRMVAGFLEMFEEGCHKMGTAICDRIQESLRGQQSNDDSILLQNGKDDDDEEYYDDHEEDSDEEYFEEYFDNDELNTQINGKDMNKT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02411 308 PANTHER CYTIDYLYLTRANSFERASE 12 283 IPR045049 GO:0004105|GO:0006657
Trre5g02411 308 NCBIfam cytidyltransferase-like domain 19 86 IPR004821 GO:0003824|GO:0009058
Trre5g02411 308 CDD CCT 16 167 IPR041723 -
Trre5g02411 308 MobiDBLite consensus disorder prediction 254 284 - -
Trre5g02411 308 Coils Coil 182 209 - -
Trre5g02411 308 MobiDBLite consensus disorder prediction 269 284 - -
Trre5g02411 308 Gene3D HUPs 5 234 IPR014729 -
Trre5g02411 308 Pfam Cytidylyltransferase-like 21 150 IPR004821 GO:0003824|GO:0009058
Trre5g02411 308 FunFam Choline-phosphate cytidylyltransferase 2 2 234 - -
Trre5g02411 308 SUPERFAMILY Nucleotidylyl transferase 19 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02411 Trre-Chr5 18610514 18612928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02411 44 294 Acyl Lipid Metabolism Gene Families AT2G32260 73.810 3.33e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02411 K00968 - gmx:100807840 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02411 5 18610514 18612928 Trre5g02411 5 18610514 18612928 ECH