Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02398 ATGGATTCAAGAGCTTATATCCTAAGAGTCGGTGTTACATATCTTTGTCTCTCGATCATCCTAGCTTCCACTCTTTTCCATTTGTGTGATGCTATAAGTCATGGAAGAGATAGAAGCTCCTCAATCAAATCATGGAAGAAAGAAAAATCTCAAAATAGTTTAAACAAATTTTCATCATTTGGATACTTTGACACTGATTCATATGGTTCTCCATCTTCTCAACCACTACCACCTTTCAATTCACTTGCACCACAACCTACTTCTCTACCACCTAATTCCCCTATTCCAAACCCACCTCATGATGTTTTTGGGCCACCAAGTCCTAAAACAATTGTTACAATTTCACCACCTCCAAGCCCACCAAAACATGTTCCAAGCCCACCTAAAAGTGTTATAAGCCCACCACAAACATACTTGCCACCTATTGTGTATCCACCACCACCCTCACCTCATAAAAAGCCACCACAATATGCAATTTGGTGTGTTGCAAAGCCTACAGTTCCTGATCCTATAATTCAGTTTGCTATGGATTATGCTTGTGGGTCTGGGGCAGATTGTAAATCAATTCAGCCCAATGGATCATGCTTTCAGCCCAATACTTTGTTGGCCCATGCTTCATATGCATTCAATAGTTATTGGCAGAACACTAAGATTGGTGGTGGCACTTGTGATTTTGGTGGAACTGCTATGCTTGTCACTGTTGATCCAAGTAAGTTTGTGCTACCATCTTTAGTTACCTTTGGGGTGTGCATCACTTGTCATGTCACATGTGAGTATGTGTCTATGTGA 789 0.4081 MDSRAYILRVGVTYLCLSIILASTLFHLCDAISHGRDRSSSIKSWKKEKSQNSLNKFSSFGYFDTDSYGSPSSQPLPPFNSLAPQPTSLPPNSPIPNPPHDVFGPPSPKTIVTISPPPSPPKHVPSPPKSVISPPQTYLPPIVYPPPPSPHKKPPQYAIWCVAKPTVPDPIIQFAMDYACGSGADCKSIQPNGSCFQPNTLLAHASYAFNSYWQNTKIGGGTCDFGGTAMLVTVDPSKFVLPSLVTFGVCITCHVTCEYVSM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02398 262 FunFam Glucan endo-1,3-beta-glucosidase 4 155 243 - -
Trre5g02398 262 Pfam X8 domain 160 230 IPR012946 -
Trre5g02398 262 SMART X8_cls 159 252 IPR012946 -
Trre5g02398 262 MobiDBLite consensus disorder prediction 68 131 - -
Trre5g02398 262 Gene3D - 156 243 - -
Trre5g02398 262 PANTHER BETA-1,3 GLUCANASE 89 250 IPR044788 -
Trre5g02398 262 MobiDBLite consensus disorder prediction 77 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02398 Trre-Chr5 18529217 18530679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02398 160 238 Glycoside Hydrolase AT5G55180 53.750 1.99e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02398 - - psat:127083356 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02398 5 18529217 18530679 Trre5g02398 5 18529217 18530679 ECH