Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02395 ATGGCTAACTATGCTATAGCCAATGTTTTGATACTTCTCTTGAACTTGAGTACCTTACTCAATGTTCTTGCTTGCCCTTATTGTCCTTACCCATCTCCTAAACCACCAACACACCACCCTCCTATTGTTAAACCACCAGTTCACAAACCACCATATACTCCTAAACCACCATCACATACTCCTAAACCACCAACACATACTCCAATACCACCAAGTCACAAACCACCAACTCATTCTCCTAAACCACCAAAGTATCCTCCTAAGCCAACACCTTGTCCACCACCATCATCAACACCAAAACCACCACATGTTCCAAAACCACCTCATTACCCTAAACCACCAATAGTTCATCCACCTCATGTTCCAAAACCACCGGTTGTTAAACCACCAATAGTTCATCCACCTTATGTTCCAAAGCCACCAGTGCATCCACCTTATGTCCCAAAACCACCGGCTGTGAAACCACCTTATGTCCCTAAACCACCAGTTGTCCCAGTTACACCACCTTATATTCCAAAACCGCCAGTTGTGCCAGTAACACCACCATATGTTCCTAAACCACCAGTTGTGAAACCACCAATTGTTTTTCCACCACATGTTCCTGTTCCTCTTCCACCGGTTGTACCGATAACACCACCTTATGTACCAACACCACCAATTGTTAAACCACCAATTGTTTTTCCACCACATGTTCCTGTTCCTCTTCCTCCTGTTGTACCAATATCACCACCTTATGTACCAACACCACCGACACCGCCAGTGGTTACTCCACCAACAGTACCTGTACCTAGTCCACCTAGTGAAACACCATGTCCTCCACCACCACCTGTACCTGTACCTTATCCACCACCACCAGCACAACAAACATGTTCCATTGATGCATTGAAGTTAGGTGCATGTGTTGATGTTCTTGGTGGACTCATACATATTGGAATTGGTGGAAGTGCCAAACAAACATGTTGTCCATTGCTTTCAGGACTTGTGGATTTGGATGCTGCTGTGTGTCTATGCACCACTATTAGACTCAAGCTTCTTAATATCAACATTGTTCTTCCTATTGCTCTTCAGCTTTTATACATTTATATTTTGGAGAGGAATTGCATGAATATTAGGTTGCTTGGAATAAGGTTAACAATGTTGAAAGAGATGTAG 1152 0.4349 MANYAIANVLILLLNLSTLLNVLACPYCPYPSPKPPTHHPPIVKPPVHKPPYTPKPPSHTPKPPTHTPIPPSHKPPTHSPKPPKYPPKPTPCPPPSSTPKPPHVPKPPHYPKPPIVHPPHVPKPPVVKPPIVHPPYVPKPPVHPPYVPKPPAVKPPYVPKPPVVPVTPPYIPKPPVVPVTPPYVPKPPVVKPPIVFPPHVPVPLPPVVPITPPYVPTPPIVKPPIVFPPHVPVPLPPVVPISPPYVPTPPTPPVVTPPTVPVPSPPSETPCPPPPPVPVPYPPPPAQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLSGLVDLDAAVCLCTTIRLKLLNINIVLPIALQLLYIYILERNCMNIRLLGIRLTMLKEM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02395 383 Pfam Hydrophobic seed protein 289 359 IPR027923 -
Trre5g02395 383 PRINTS Proline rich extensin signature 79 96 - -
Trre5g02395 383 PRINTS Proline rich extensin signature 24 36 - -
Trre5g02395 383 PRINTS Proline rich extensin signature 57 73 - -
Trre5g02395 383 PRINTS Proline rich extensin signature 36 57 - -
Trre5g02395 383 Gene3D - 288 369 IPR036312 -
Trre5g02395 383 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 292 358 IPR036312 -
Trre5g02395 383 PANTHER - 13 359 - -
Trre5g02395 383 CDD HPS_like 288 358 IPR027923 -
Trre5g02395 383 MobiDBLite consensus disorder prediction 39 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02395 Trre-Chr5 18452921 18454684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02395 - - mtr:11443033 144.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02395 5 18452921 18454684 Trre5g02395 5 18452921 18454684 ECH