Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02360 ATGGCGCCACACGATCTCCGCCGTCCGTTCAAGCGACCTTTAATCTCCGATCAAGAGAGACGAAGACAACATTCCTTACTCCGTCAAGCACAGAATCGCCTCGATGCCCAACGCCACGCTCGCTTCTTAGCCTCCACCGCATTCTCTCTTTCATCCTCCCAAACTGTCGATACACCGGAACCTCAACCCGAACCTGAGCACGAACCGGAACCACATCAGAAGGAGGAGCTCGACGTCTTGGAAGCATCGAAGCTAAAAGGCGCTGAAGCTCGAAAATGGTTCGCGAAACAACTCATGCATCCTGAATGGATGATCGATATCCCCGAAAATCTCACCAATGATTGGTTTGTTTTTGCAAGGCCTTCGGGAAAACGGTGTTTTGTTGTTTCTAGTAACGGAACAACTATAAGCCGTTTGAGAAACGGTTCAATACTTCACCGTTTTCCTTCTAAATTGCCAAATGGTGCAAGGACAAAGGAAGTTTCTTCTGGTTCTTCAAATTCTTACTCTATACTCGACTGCATTTTCCACGAGCAGGATCAAACTTACTACGTTATTGATATGGTTTGTTGGCGTGGCTACTCCCTTTATGATTGTACTTCGGAGTTTAGGTTCTTTTGGGTGAACTCTAAGCTTGCTGAGACTGGTGCTTGTGATCCTCCTTCATATTATCATAAGTATAGGTTCAGTTTAGTTCCGGTGTACAGTTGTGACCAGAGTGGTTTGTGTTCAGCTTATTCCGCGCCTGTGCCTTATGTCAAAGACGGTCTTCTATTCTATAACAAGCATGCACATTACCAGGCTGGGATTACACCATTAGCATTAGTTTGGAAGGATGAAAACTGCAGTCAATATGTTATGGACACTGACAACAATGGACAGGTTCCTAACCAACAACAGGTGGTTTTGGAGCTTCAAGAAGATGGTAAACTTGCTACCTGCGATGATCCTCCCATGGCATTTGGCTGTTTGGATGGAAGCTTCATCCTGCAGTCAGATTTGCATTCAGGGTATCTTCTACGGTTTGCAATTGGAGAGGGAGGATTGGTTTTGGTGGATGGGAAACTTGAGAAAGCCGATCTAAAGTATCTTGGCAAAGCCAATCGAGCTCGTGCCTCTGCTGACAGTTTCTCTAAGGTTGTTATGTTCCAATATAGTGTTCGACACTCCCCCCTCAAAATTGATGATTTGTTGGGATCTGTTAGCTCCCCAGTAGATCAAGAAAGTAAAACATGCGACATTGAGATGGATGGCTGA 1257 0.4535 MAPHDLRRPFKRPLISDQERRRQHSLLRQAQNRLDAQRHARFLASTAFSLSSSQTVDTPEPQPEPEHEPEPHQKEELDVLEASKLKGAEARKWFAKQLMHPEWMIDIPENLTNDWFVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSKLPNGARTKEVSSGSSNSYSILDCIFHEQDQTYYVIDMVCWRGYSLYDCTSEFRFFWVNSKLAETGACDPPSYYHKYRFSLVPVYSCDQSGLCSAYSAPVPYVKDGLLFYNKHAHYQAGITPLALVWKDENCSQYVMDTDNNGQVPNQQQVVLELQEDGKLATCDDPPMAFGCLDGSFILQSDLHSGYLLRFAIGEGGLVLVDGKLEKADLKYLGKANRARASADSFSKVVMFQYSVRHSPLKIDDLLGSVSSPVDQESKTCDIEMDG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02360 418 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 417 IPR017336 GO:0005634|GO:0005737|GO:0061015
Trre5g02360 418 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 94 278 - -
Trre5g02360 418 MobiDBLite consensus disorder prediction 61 75 - -
Trre5g02360 418 MobiDBLite consensus disorder prediction 1 32 - -
Trre5g02360 418 CDD Snurportin-1_C 93 280 - -
Trre5g02360 418 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g02360 418 MobiDBLite consensus disorder prediction 47 75 - -
Trre5g02360 418 Gene3D DNA ligase/mRNA capping enzyme 2 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02360 Trre-Chr5 18069106 18072665 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02360 K13151 - gmx:100801927 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02360 5 18069106 18072665 Trre5g02360 5 18069106 18072665 ECH