Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02346 ATGGCGGCCACTTCTGAACCTTCCATCGGCAACACCGCTTCTCTTCCTGTTGTTGATCTCCGTCTTGTTTCTCAACCCGAACTATTCACTCTCTCTTTTTCGCACGATACCGGTCGTAACCGTCGCATCGACGACGACTCCGTTATCCCTAGAATCGACCGTTCGGTTTTCAATGAGTCTGCAGGTAGCCGAAAACAGACGTTTTCTCGTCTCAATTTTCGCAACAACAACAACAACAACCCGAACTATTCCGTTCCCGTTGCTCCTGTTGTTCCCGCTTCTGAATCTTCGTCTTCGCACATTACTGTTGACGAAGAGAATTCTCAAATAATCGATCTTCTTCAACAGCTTTTTGGCGTGGAAGCTCTTCGCGGCGCCAATGATGACCGTTTGGTTCCGTTCCAGGGTGAATTCAAACAACCTGCTATTGAATTTACGCCTCAAGGTTTTCAGAGCGTTGCAATTGGCGGTGTGGATGGTAGTCAGAGGAAGCGGAAGCGCGGACGGCCGCGCAGGGACGAGACGAGTTTAGTTGTTGTCGGCGACGGTGATGTGGAGATGGTGGAAGCGGTTAATGAGCAGAAGGTGGGAACGGCTAACAAGAAGAAAGATTTTGTTCTGGAAGATGCTGGGGATCCGTTTGTGGAGGAGTTGATAGTGAGGACACAAGGGATGAATACGGAGGCGCAATTGTCGGAGTTTTTGGAGGGTTTGAATGGAGTTTGGGCGAGTGATAGGAAGAAGAGGAGGATTGTTGATGCTAATGTTATCTGTGATTTGCTGCCAACTGGATGGAAGCTTATTCTTATTCTGCAGAGGAGAGGGGCTCGTAATTCGGTGGTTTGTCGCCGTTACGTAAGCCCTGATGGACGTCAGTTTGAGTCATACAAGGATGTTTCTTCATACTTGGATGGTAGTCAGCAGTTCTCCAATAATATCAATATGGCATCTGAAAATCAGAATGTTGGTCACGTTCCTATAGGTGGCATTAAGATTGATGACAATGCAAGTTCTCGTCATGAGAAGCAGGCCACCATATCATCATCAATTGAAACCGGAAAGCGAAATACTTCTGATGGGTGTTTAAATGGTGACCGGGCTATGGATTTTGAATTAGGTGATACTACTAGTGGAGCCTTTGGAGTCTCTGATCATCCAGCTGACGATAAGCTACAACAGAAGGCCAATAAGAATGATGTGAATTCATATCAAGGATGTTCTCTGTCAGAGGACAGAGTTTATAATCAGAGTGCTGGTCACATCCCTACAGGTGGAATGAAGATTGATGCCAATGCTAGTTCTCATAAGAAGAAGCAGGCCACCATGTCATCATCAATTGGAACTGCAAAGCTGAACAGTTCTAACCGGAAACCGGATCGGATATTGGTTCTTGGTCTTAAAGCTATTGATGTTGCATGCAATCATCGTATTTCGGATTTCAGAGCTCCTATCTCCAATAGTAGCTGTAGTATTAATCGTTTTTCTGATGAAAGATGCCTAAAAGGCGGTGTTAGTATTATTGATGGTCAGGATAAAAGTACTGGATGCTATGAAACTGCTCCAAATGGAAATGAGCGAGTACCTGTTGGTGGTCATGTGCTTGGGTTTTCCACCACATTAGTTGAAAGCCACATTCAGAAAATAGGTTCTGAAAACAGTATGCTGGTTCCAAATTCTGAAGGGAAAAATGGCGGAAAGCTAGTTAAGGAGGATGACAGTCAACAAATTATTGATGGTCAGGATAAAAATACCGGATGCTATGAAACTGCTCCAAATGGAAATGAGCGAGTACCTGTTGGTGGTCATGGGCTTGGGTTTTCCACCACATTAATAGAAAACCAACTTCAGAATATAGGTTCTGAAAACAGTATGCTGGTTCCAAATTCTGAAGGGAAAAATGACGGAAAGCTAATTAAGGAGGATGGCAGTCAACAAATTATTGATGGTCAGGATAAAAGTACTGGATGCTATGAAACTGCTCCAAATGGAAATGAGCGAGTACCTGTTGGTGGTCATGGGCTTGGGTTTTCCACCACATTAATAGAAAACCACCTTCCGAATATAGGTTCTGAAAACAGTATGCTGTTTTCAAATTCTGAAGGGAAAAATGACGGAAAGCTAATTAAGGAGGATGGCAGTCAACAAATTATTGATGGTCAGGATAAAAGTACTGTATGCTATGAAACTGCTCCAAATGGAAATGAGCGAGTACCTGTTGGTGGTCATAGGCTTGGTTTTTCCGCCACATTAATAGAAAACCAACTTCAGAATATAGATTCTGAAAACAGTATGCTGGCTCCAAATTCTGAAGGGAAAAATGCCGGAAAGCTAGTTAAGGAGGATGACAGTCAACAAATTATTTCTAGTACATATCTGTCAGAAATTCAAGATATTTCTACTAAAGGTAAACTTCAGTTTGGTTCCGAAGGCTCTCTTGTCCCATCCCAGAATGGACTTAATCACACATCTACGGACAATATGAACAATGGACAAACTTCTATGCTGAATGACTCTGCCGAGGGAAATTTTTTCTATAATGATATACCTAGCTCATCCATTGATGAGAGAACATGGGATCCCAATGGATACATTAATGACATTTCTTTTGGTGCTTGGCCACAAGATACATCTGAGTCTGGTGGAGTTGATTTTACTCCCATTCTTTATGTAGCTGACAATGTCGGGCATAATCATATTCCTCCAACAAGCTGTTTACAGAAAAGTTCTATGAATGACCAAATTTTAACAATGGACAATCTATTGCACAGAAGTTCTGAAAGTAGCTTATTTACTGTAACCGGGGATCACCACCCTTCTGCTTTTCATGATAATATGAATAACATCTCAGCTGGAACCTTTGGTGCACTCAAACATGTTGATGATGGTTGCATGAAGCCTCAGTCAGGAATTGTTTCTTGCAGCGATGTTGTTGCAATAGATGCATATGCATCTCCTAGACCACAATCTGTTCCTTCTGATGGAAGTCTGTTGAACCAATTTGACAAGCAAAATGATGATGGTGTTAATAATGGATATAAATCTTTCTTATCAGAAATGGCTAAGAATGAAGTTGAAATATTCCCAACCGATTTGATGGGTATGCCTAAATTTCAGTAG 3117 0.4225 MAATSEPSIGNTASLPVVDLRLVSQPELFTLSFSHDTGRNRRIDDDSVIPRIDRSVFNESAGSRKQTFSRLNFRNNNNNNPNYSVPVAPVVPASESSSSHITVDEENSQIIDLLQQLFGVEALRGANDDRLVPFQGEFKQPAIEFTPQGFQSVAIGGVDGSQRKRKRGRPRRDETSLVVVGDGDVEMVEAVNEQKVGTANKKKDFVLEDAGDPFVEELIVRTQGMNTEAQLSEFLEGLNGVWASDRKKRRIVDANVICDLLPTGWKLILILQRRGARNSVVCRRYVSPDGRQFESYKDVSSYLDGSQQFSNNINMASENQNVGHVPIGGIKIDDNASSRHEKQATISSSIETGKRNTSDGCLNGDRAMDFELGDTTSGAFGVSDHPADDKLQQKANKNDVNSYQGCSLSEDRVYNQSAGHIPTGGMKIDANASSHKKKQATMSSSIGTAKLNSSNRKPDRILVLGLKAIDVACNHRISDFRAPISNSSCSINRFSDERCLKGGVSIIDGQDKSTGCYETAPNGNERVPVGGHVLGFSTTLVESHIQKIGSENSMLVPNSEGKNGGKLVKEDDSQQIIDGQDKNTGCYETAPNGNERVPVGGHGLGFSTTLIENQLQNIGSENSMLVPNSEGKNDGKLIKEDGSQQIIDGQDKSTGCYETAPNGNERVPVGGHGLGFSTTLIENHLPNIGSENSMLFSNSEGKNDGKLIKEDGSQQIIDGQDKSTVCYETAPNGNERVPVGGHRLGFSATLIENQLQNIDSENSMLAPNSEGKNAGKLVKEDDSQQIISSTYLSEIQDISTKGKLQFGSEGSLVPSQNGLNHTSTDNMNNGQTSMLNDSAEGNFFYNDIPSSSIDERTWDPNGYINDISFGAWPQDTSESGGVDFTPILYVADNVGHNHIPPTSCLQKSSMNDQILTMDNLLHRSSESSLFTVTGDHHPSAFHDNMNNISAGTFGALKHVDDGCMKPQSGIVSCSDVVAIDAYASPRPQSVPSDGSLLNQFDKQNDDGVNNGYKSFLSEMAKNEVEIFPTDLMGMPKFQ 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02346 1038 SUPERFAMILY DNA-binding domain 253 306 IPR016177 GO:0003677
Trre5g02346 1038 Gene3D - 253 320 - -
Trre5g02346 1038 Pfam Methyl-CpG binding domain 254 308 IPR001739 GO:0003677
Trre5g02346 1038 MobiDBLite consensus disorder prediction 324 359 - -
Trre5g02346 1038 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 10 942 IPR037472 -
Trre5g02346 1038 MobiDBLite consensus disorder prediction 341 359 - -
Trre5g02346 1038 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 251 320 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02346 Trre-Chr5 17951461 17956873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02346 - - tpra:123896991 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02346 5 17951461 17956873 Trre5g02346 5 17951461 17956873 ECH