Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02341 ATGGCAATGCTAGAACCCAACAACATTTGCAACCAACATTATTCGCATTCTCTTCCCATTTTCTTCAACCCCAGCTTCGATTTTGGAACTGGTGGATTGTTTCTCGAACCAACAATTCCTGATTCTTTTGTTCGTTTCATTTCGTGTAGAATTCCACCAACTGAATCGAATCTTCACCGCCGGCAACGGCGAAGGGTTCCGTCGGTTGGGTGTTTTTTGTCGGTTAGCTTGCCAAGCAATACTAACCTTCCTGTAGTTGGTGAGCACGTTTCTGACAAGGAGACGGCACCGGATGGTGTCGTTTTGCATACAAAGGTTAGGGCAAGAGAACGTGGTGCTGTTAATACCACCAAGCATCTATGGGCTGGTGCTATATCTGCAATGGTTTCTAGAACTTGTGTTGCTCCACTTGAAAGACTTAAGCTGGAATATATAGTTCGTGGCGAGAAGAGGAATATCTTTGAGCTTATTAAATCAATTGCTACTTCTCAAGGGTTGAGAGGTTTTTGGAAGGGGAACCTTCTTAATATTCTGCGAACAGCTCCGTTCAAAGCTGTTAATTTTAGTGCTTACGATACATACAGAAAACAACTACTTAGATTCTCTGGGAATGAGGAAACTACCAATTTTGAGAGGTTTATTGCTGGTGCTGCTGCTGGGGTCACTGCTACTATTATTTGCCTGCCACTCGACACTATTAGGACCAAGATAGTGGCACATGGCGGAGAAGCTTTTGGGGGTGTAATTGGTGCTTTTCAATACATGATTCAAACTGAAGGCTTCTTTTCTTTATACAAGGGTTTAGTACCATCACTTCTAAGCATGGCTCCTTCTAGTGCAGTCTTTTATGGTGTATACGATATGCTAAAATCAGCTTATCTGCATTCACCTGAAGGAATGCAAAGAATCCAGAATATGCATAAACAGGGGCTGGAGCATGAACTGAGTGCTTTTGATAAGCTTGAGTTGGGGCCAGTAAGGACGTTGTTGTATGGGGCTGTTGCTGGTGCATGTGCAGAAGCTGCTACATACCCATTTGAAGTGGTCAGGAGGCGGCTTCAATTGCAAGTCCAGTCTACTAAATTAAGTTCTTTAGCAACTTTTGTCAAAATAGTGGAACAAGGAGGCATTTCAGCCCTTTATGCAGGACTTATTCCCAGCTTATTACAGGTATTAAATTCTTAA 1185 0.4278 MAMLEPNNICNQHYSHSLPIFFNPSFDFGTGGLFLEPTIPDSFVRFISCRIPPTESNLHRRQRRRVPSVGCFLSVSLPSNTNLPVVGEHVSDKETAPDGVVLHTKVRARERGAVNTTKHLWAGAISAMVSRTCVAPLERLKLEYIVRGEKRNIFELIKSIATSQGLRGFWKGNLLNILRTAPFKAVNFSAYDTYRKQLLRFSGNEETTNFERFIAGAAAGVTATIICLPLDTIRTKIVAHGGEAFGGVIGAFQYMIQTEGFFSLYKGLVPSLLSMAPSSAVFYGVYDMLKSAYLHSPEGMQRIQNMHKQGLEHELSAFDKLELGPVRTLLYGAVAGACAEAATYPFEVVRRRLQLQVQSTKLSSLATFVKIVEQGGISALYAGLIPSLLQVLNS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02341 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 197 IPR018108 -
Trre5g02341 394 PANTHER SOLUTE CARRIER FAMILY 25 108 392 - -
Trre5g02341 394 Gene3D Mitochondrial carrier domain 110 394 IPR023395 -
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 172 192 IPR002067 GO:0055085
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 119 132 IPR002067 GO:0055085
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 132 146 IPR002067 GO:0055085
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 265 283 IPR002067 GO:0055085
Trre5g02341 394 PRINTS Mitochondrial carrier protein signature 332 354 IPR002067 GO:0055085
Trre5g02341 394 SUPERFAMILY Mitochondrial carrier 113 391 IPR023395 -
Trre5g02341 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 292 IPR018108 -
Trre5g02341 394 FunFam Mitochondrial substrate carrier family protein 113 394 - -
Trre5g02341 394 Pfam Mitochondrial carrier protein 114 199 IPR018108 -
Trre5g02341 394 Pfam Mitochondrial carrier protein 323 391 IPR018108 -
Trre5g02341 394 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Trre5g02341 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 323 394 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02341 Trre-Chr5 17889848 17892872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02341 31 391 Organic Solute Cotransporters AT5G64970 63.731 6.10e-156 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02341 - - gmx:100812227 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02341 5 17889848 17892872 Trre5g02341 5 17889848 17892872 ECH