Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02306 ATGGAGCAATTCACTAACGACGATCTTGAATACGTTACCGACGACTACTTCGAATTCTCTGATTTCGAAGACACTGAAAACAACTTCTCCGAAAATCTTCCTCCTCGTATTTCCGATTCCGATTCTCACGACTCCGATTTTGAAGAAGATTTCGAAACGAGTAATGTGAAGACTGATACATCTGCTTTGGAAGCACGAAACGGGAAAGATATTCAGGGAATTCCATGGGAGAGGCTTAATTATAGTAGAGATGAATATCGTGAGACTCGTTTGAAACAGTATAAGAATTACGAGAGCCTCACGCGCTCACGTGAAGAACTTGATAAGGAATGTTTGGAAGTGCAGAAAGGGAAGTCCTTCTATGATTTTCAGTTCAATACCAGGCTTGTCAAATCAACAATTGTGCATTTTCAGCTGAGGAATCTGTTGTGGGCAACATCAAAGCATGATGTATACCTTATGCAAAACTACTCCGTGATGCATTGGTCCTCATTACTAAGAAGGGGTAAAGAAGTGCTAAATGTGGCCAAACCAATTATTCCAACCCTTAAGCATTCTGGATTAGTTCACCCTGTATCACGAGTGCAAATTAGCACCATGACTGTTAAGGAAAACCTGATGGTGGCAGGTGGTTTCCATGGCGAGCTTATTTGCAAGAATTTGAATCATTCCGGAGTTGCATTCTGCAGTAAATTAAGTACAGATGATAATGCCATAACCAATGCAGTGGATGTTTTCCACAATCCCAGTGGGTCATTGATGGTCATCGCAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCAGAAAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTCAATAATGCCTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTCCTGAGGGCTTGATTGCTGAAGCTAATACTGGGAAGGTTACTGGAAACCTAAAAGGGCACTTGGACTATTCTTTTGCATCTGCCTGGCACCCAAATGGACAAATATTGGCTACTGGAAATCAGGACACAACATGCAGATTGTGGGACATAAGAAATCTTTCACAGTCCATAGCAGTACTAAAGGGAAGAATGGGTGCTATAAGGGCCTTAAGGTTCACATCCGACGGACGGTTTTTGGCCATGGCTGAGCCAGCAGATTTTGTTCATATTTTTGATTCACAATCAGGTTACACACAAAGTCAAGAGATAGATATATTTGGTGAAATTGCTGGTGTATCTTTTAGCCCTGACACAGAGGCTCTCTTTGTTGGTGTTGCTGATCGAACATACGGTAGCTTGTTAGAGTTCACCAGAAAACATTATTATCAGTATCTAGACTCGATGATTTAA 1356 0.4145 MEQFTNDDLEYVTDDYFEFSDFEDTENNFSENLPPRISDSDSHDSDFEEDFETSNVKTDTSALEARNGKDIQGIPWERLNYSRDEYRETRLKQYKNYESLTRSREELDKECLEVQKGKSFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIIPTLKHSGLVHPVSRVQISTMTVKENLMVAGGFHGELICKNLNHSGVAFCSKLSTDDNAITNAVDVFHNPSGSLMVIAANNDSQVRVFDAENFASLGCFKYDWSVNNASVSPDGKLLAVLGDSPEGLIAEANTGKVTGNLKGHLDYSFASAWHPNGQILATGNQDTTCRLWDIRNLSQSIAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSQSGYTQSQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTRKHYYQYLDSMI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02306 451 SUPERFAMILY WD40 repeat-like 181 431 IPR036322 GO:0005515
Trre5g02306 451 MobiDBLite consensus disorder prediction 24 53 - -
Trre5g02306 451 MobiDBLite consensus disorder prediction 37 53 - -
Trre5g02306 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Trre5g02306 451 SMART WD40_4 312 351 IPR001680 GO:0005515
Trre5g02306 451 SMART WD40_4 355 394 IPR001680 GO:0005515
Trre5g02306 451 SMART WD40_4 213 268 IPR001680 GO:0005515
Trre5g02306 451 Gene3D - 176 433 IPR015943 GO:0005515
Trre5g02306 451 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Trre5g02306 451 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Trre5g02306 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Trre5g02306 451 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 448 - -
Trre5g02306 451 FunFam WD-40 repeat family protein 232 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02306 Trre-Chr5 17499737 17504215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02306 301 431 Miscellaneous Gene Families AT5G08390 31.690 6.68e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02306 - - mtr:25489425 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02306 5 17499737 17504215 Trre5g02306 5 17499737 17504215 ECH