Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02300 ATGGCAGCTGAAGTATGTCACCATGCTATTGGGACTTTGCAGTCTCATTCTTATCTTAGTAATTTGAATCAGCATCAAAATCTCAAGAGCAATTCACTAAGATTGGCTACAAAGGATTTTAGCTGTAGTAATGGCTTGTTGAAGGGAAGAAGTAGTCACTTTGGCCAGAGGAATTGTATTGTTACTCGATCTTCGGCTACTCATTCTCAGACATCAGTTGTTGATCCGGTATTGTCCCCTTCAAGAAGCAACTCCGGTGAAACTTCCAAGAAATCAAATGAAGCAGCTTTGATCCTTATTCGACATGGTGAGTCGTTGTGGAATGAGAAGAATTTGTTCACAGGCTGTGTGGATGTACCTCTTAGCAGTAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGTAGCATTCCGGTTGATGTCATATTTACATCTGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTAAGAAGGTGCCTATCGTTATGCACAGTGAGAGTGAACAAGCAAAGGCATGGAGTCAAGTTTTTAGCGAAGATACAAAAAAGCAGTCTATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGAGAACTACAGGGTCTCAATAAACAAGAAACAGCAGACAGATACGGGAAAGAACAAGTCCATGAGTGGCGTCGAAGCTATGACATACCACCTCCCAATGGTGAAAGTTTGGAAATGTGTGCAGAAAGAGCAGTTGCCTATTTCAGAGACCAGATTGAACCCCAACTTTTATCCGGAAAGAATGTTATGATTGCAGCACACGGGAATTCATTGAGATCCATTATCATGTATCTCGACAAATTAACTTCCCAAGAGGTTATTAGTTTAGAACTGTCGACCGGAATTCCAATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCAACTGAAGCTGGAGTTTATGCCTATACCAAGCGTTTGGCTCTTTACAAGCAGAAGTTGGATGAGATGTTCTAA 1041 0.4179 MAAEVCHHAIGTLQSHSYLSNLNQHQNLKSNSLRLATKDFSCSNGLLKGRSSHFGQRNCIVTRSSATHSQTSVVDPVLSPSRSNSGETSKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSSKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRKKVPIVMHSESEQAKAWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPTEAGVYAYTKRLALYKQKLDEMF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02300 346 PANTHER PHOSPHOGLYCERATE MUTASE 86 333 IPR005952 GO:0006096|GO:0016868
Trre5g02300 346 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 94 321 IPR005952 GO:0006096|GO:0016868
Trre5g02300 346 SUPERFAMILY Phosphoglycerate mutase-like 97 313 IPR029033 -
Trre5g02300 346 Gene3D - 86 319 IPR029033 -
Trre5g02300 346 MobiDBLite consensus disorder prediction 71 91 - -
Trre5g02300 346 Pfam Histidine phosphatase superfamily (branch 1) 171 300 IPR013078 -
Trre5g02300 346 Pfam Histidine phosphatase superfamily (branch 1) 97 164 IPR013078 -
Trre5g02300 346 CDD HP_PGM_like 97 316 IPR013078 -
Trre5g02300 346 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 99 108 IPR001345 GO:0003824
Trre5g02300 346 SMART PGAM_5 96 282 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02300 Trre-Chr5 17439559 17441590 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02300 K01834 - gmx:100802621 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02300 5 17439559 17441590 Trre5g02300 5 17439559 17441590 ECH