Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02292 ATGACCTTGGCTATGGCTTCTTTCCGCATTGTATTTCGCCACATATTACACACCAACACCTATAACCGCTTCTTCCCTCCACCAACTCGCGCCACGTGGCGGCGGTGTCTTCTTTCTTCTCGTACATTTTCAACTAATTCAACTAATTACAACAATTACAGCGTTGTTGTAAAGAAAGACGAACGGTTAGGGGAACAAACTGAGAATGAAAACTCCGATGTTGTAAACTCGACAACAATTGCAGCCATAGTAACATCGTTAGGTGGTCCTCCTGCTGCTGTTGGAATCGTTCGCCTTTCGGGTCCTCATGCGGTGTCTATTGCGGGTCAAGTATTTCGACCCGCTGTAAGAAACACGTGGCAGCCTACTAGTCATGTTGTTGAATACGGCGTCGTTTTGGATTCCGATGGAAATGTCATCGACGAGGTTTTAGCGGTGCCTATGCTAGCACCGAGATCGTATACTCGGGAAGATGTTGTTGAACTTCAATGTCATGGGAATGAAGTGTGTTTGCGTCGTGTGCTTAGGACTTGTTTGGAAGCTGGAGCAACACTTGCTCAACCAGGAGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTTTGGATCTGTCCCAAGCTGAAAATGTTGCAAGACTGATCTCAGCTAAATCTATGGCTGCCGCTGATGCAGCGCTAGAAGGAATTCAGGGTGGTTTCTCTTATCTTGTCAGATCATTGAGAAATCAGTGCATCGACATGCTCACTGAGATTGAAGCTCGTTTGGATTTTGAAGATGAGATGCCACCTCTAGATTTGAATGGGGTTATGGATAAAATACAACATATGTCACAAGATGTTGAGAATGCACTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGTTAGCAATTGTTGGCCGTCCTAATGTCGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACAACTCGAGATGTGATTGAAGCAAGTATTAACATCAACGGCATCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGGTGTAGAGCGATCTGAAGCTGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTGCTAAGGAATCAACTGGATCTTCCACCCCAGTAATCCTCGTGGTCAACAAGATAGATTGTGAGCCTAGTGTTGAGACTGAATGGGACCAAAGATGTCACCACAGTCACAAAATTTTCAGCAAACAAGTGTTTACATGTGCTGTAACCAGTCAAGGAATACAAGACTTAGAGAAAGCAGTTTTAGAGATTGTGGGTATGGATGGCATTGCTGCCGGGGGTCGCAGATGGACTGTAAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCGCTTGTGAGGTTACAATCATCAATAAAGGAGGAACTACCTATGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAATGGAGAAGATATTTCAGAGGAAGTTTTATCAAATATATTTAGCAAGTTCTGTATTGGTAAATAA 1638 0.4341 MTLAMASFRIVFRHILHTNTYNRFFPPPTRATWRRCLLSSRTFSTNSTNYNNYSVVVKKDERLGEQTENENSDVVNSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGQVFRPAVRNTWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLISAKSMAAADAALEGIQGGFSYLVRSLRNQCIDMLTEIEARLDFEDEMPPLDLNGVMDKIQHMSQDVENALETANYDKLLQSGLQLAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKESTGSSTPVILVVNKIDCEPSVETEWDQRCHHSHKIFSKQVFTCAVTSQGIQDLEKAVLEIVGMDGIAAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQINGEDISEEVLSNIFSKFCIGK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02292 545 CDD TrmE_N 79 199 IPR018948 -
Trre5g02292 545 PANTHER TRNA MODIFICATION GTPASE GTPBP3 62 545 - -
Trre5g02292 545 Pfam GTP-binding protein TrmE N-terminus 79 200 IPR018948 -
Trre5g02292 545 PRINTS Transforming protein P21 ras signature 336 358 - -
Trre5g02292 545 PRINTS Transforming protein P21 ras signature 408 421 - -
Trre5g02292 545 PRINTS Transforming protein P21 ras signature 296 317 - -
Trre5g02292 545 CDD trmE 293 466 IPR031168 -
Trre5g02292 545 Pfam 50S ribosome-binding GTPase 298 418 IPR006073 GO:0005525
Trre5g02292 545 FunFam tRNA modification GTPase MnmE 74 200 - -
Trre5g02292 545 Gene3D tRNA modification GTPase MnmE domain 2 201 545 IPR027368 -
Trre5g02292 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 461 IPR027417 -
Trre5g02292 545 Hamap tRNA modification GTPase MnmE [mnmE]. 78 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Trre5g02292 545 Pfam MnmE helical domain 203 542 IPR025867 -
Trre5g02292 545 Gene3D Probable tRNA modification gtpase trme; domain 1 65 200 IPR027266 GO:0005515
Trre5g02292 545 FunFam tRNA modification GTPase MnmE 296 473 - -
Trre5g02292 545 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 295 466 IPR031168 -
Trre5g02292 545 Gene3D - 296 473 IPR027417 -
Trre5g02292 545 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 92 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Trre5g02292 545 NCBIfam small GTP-binding protein domain 297 438 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02292 Trre-Chr5 17347970 17352112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02292 K03650 - gmx:100818096 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02292 5 17347970 17352112 Trre5g02292 5 17347970 17352112 ECH