Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02276 ATGGGTTCGATTTTCAGTGTGGCGAATAATACCAATTCTGATCAAAGTGACCGGGAAGGAGTCTCTTCAAATGAGACATGTAAGAGGCAAAGAATGTCGCCTACCGTTGATGAAGAGAATCCAAGACTATTCCCTAATCTTCCTGATGAGGTATCAATTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTTAATTTTAGGCTTGTTTCGAGGAAGTGGAAGTCAACGATTATGAGTACGGAACTATATGAAGTAAGAAAAGAACTAGGAACGACGGAAGAGTGGTTATATCTGTTGGTTAAGTTAGGCGAAAATAAGCTTTTGTGGCATGCTGTAGATCCTCGTTCTCGAATATGGCAGAGACTGCCTAGTATGCCTAATGTTGTTGATGAAGAAGACTCTAAGAAGGGTTCCTCGAGGCTTTGGATGTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAAGCTTTCTTGGAAAGAGGGATGCATTTGATGAAATGCCCTTTTGTGGTTGTGCTATTGGAGCTGTTGGTGGGTGTCTCTATGTTCTAGGTGGATTCTCTAAAGCTTCAACTATGAGATGCGTCTGGCGATTCGATCCGATACAAAATACGTGGAGCAAGGTCACTTCTATGTCAACGGGCCGGGCATATTGTAAGACAGGAATCTTAAACAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCCTGCTGGATTGCTACCTCTTCAATCTGCTGAAGTTTTTGATCCCTCTACAGATACATGGTCAGAAATGCCTAGTATGCCGTTCTCGAGAGCTCAAGTCCTTCCCAGCACTTTCTTAGCCGACATGTTAAAACCAATTGCGACAGGGTTGACATCATACATGGGAAGATTATGTGTTCCGCAGAGTTTGTATTCGTGGCCCTTCTTTGTCGATGTTGGAGGAGAAATCTATGATCCTAAAACAAACTCATGGATAGAAATGCCAATTGGAATGGGCGAGGGTTGGCCTGCACGGCAAGCAGGTACAAAATTGAGCGTCGTAGTGGATAACGAATTATACGCTTTCGATCCTTCTAATACAATGGACAGTGGAAGGATCAAGGTATATGATCAAGGCGAAGATGCTTGGAAAGTTGTTATCGGAAAAGTCCCTATATATGGTTCTGATGATTCAGAATCTCCTTATCTACTTGCCGGTTTCCATGGAAAACTTCATGTCATCACAAAAGATGCCACTCATAATATTGCTGTTTTGCAGGCGGAGTTACGCAATAATTTGGATTCCTCGCCATCATCACCCTCCTCAACTCTGTCACAAAATCCCTTGCCTGAATTTGTGGACCCGCCGGCCGAAACAGATGCAGTTGTTTGGAAGATAGTTGCAAGTAGGTGTTTGGGACAAGCTGAATTAGTTAGTTGCCAAGTAATTGACATGTAG 1437 0.4273 MGSIFSVANNTNSDQSDREGVSSNETCKRQRMSPTVDEENPRLFPNLPDEVSIQIIARLPRICYFNFRLVSRKWKSTIMSTELYEVRKELGTTEEWLYLLVKLGENKLLWHAVDPRSRIWQRLPSMPNVVDEEDSKKGSSRLWMWNMVEGIRIAEVIRSFLGKRDAFDEMPFCGCAIGAVGGCLYVLGGFSKASTMRCVWRFDPIQNTWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGPAGLLPLQSAEVFDPSTDTWSEMPSMPFSRAQVLPSTFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPKTNSWIEMPIGMGEGWPARQAGTKLSVVVDNELYAFDPSNTMDSGRIKVYDQGEDAWKVVIGKVPIYGSDDSESPYLLAGFHGKLHVITKDATHNIAVLQAELRNNLDSSPSSPSSTLSQNPLPEFVDPPAETDAVVWKIVASRCLGQAELVSCQVIDM 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02276 478 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g02276 478 Pfam F-box domain 44 81 IPR001810 GO:0005515
Trre5g02276 478 SUPERFAMILY Kelch motif 104 407 IPR015915 GO:0005515
Trre5g02276 478 SUPERFAMILY F-box domain 41 85 IPR036047 GO:0005515
Trre5g02276 478 ProSiteProfiles F-box domain profile. 41 87 IPR001810 GO:0005515
Trre5g02276 478 PANTHER OS02G0202900 PROTEIN 19 476 IPR045887 -
Trre5g02276 478 MobiDBLite consensus disorder prediction 1 41 - -
Trre5g02276 478 MobiDBLite consensus disorder prediction 21 36 - -
Trre5g02276 478 SMART kelc_smart 230 280 IPR006652 GO:0005515
Trre5g02276 478 SMART kelc_smart 183 229 IPR006652 GO:0005515
Trre5g02276 478 CDD F-box_AtAFR-like 43 87 - -
Trre5g02276 478 MobiDBLite consensus disorder prediction 426 442 - -
Trre5g02276 478 Pfam Kelch motif 219 267 IPR006652 GO:0005515
Trre5g02276 478 Pfam Kelch motif 171 216 IPR006652 GO:0005515
Trre5g02276 478 MobiDBLite consensus disorder prediction 426 445 - -
Trre5g02276 478 Gene3D - 104 384 IPR015915 GO:0005515
Trre5g02276 478 SMART fbox_2 47 87 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02276 Trre-Chr5 17236552 17237988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02276 37 265 Miscellaneous Gene Families AT4G33900 27.039 1.29e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02276 - - gmx:100806691 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02276 5 17236552 17237988 Trre5g02276 5 17236552 17237988 ECH