LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02262	ATGGATTCTCAAGCTGGTTTATCTTTAGGGTTGAATGCTTCTATGCAATCACCTGCTGGTTCATCAACTGCTTCACATAGTGATGATCCTCTTTCTTTTAATTTTTTGAATTCTAAATCAAATTCAAAATCAACTACTACTACTACTACTAATTCACATAGTCTTTCATGGTGTTTTGTTCCTGAAAAACAACCAGAGAATAATGTTGTTGTTGTTGTTAAGAAACGTGAACATGAGGAAGATGAAGATGGGGTTGTTGATGGGGAAGAACAAGGTGAAACTATTAATTTTATGGGTAGGACTGTTTCTGTGAAGAGAAAGATAGAGGAGTGTCAACAAAGTTTTCCGGTGAAGCGTGTTGCGGTTGATTCGAAGGCTGTTAGTTGGGGGAATCAGCCATTGAGTGTTGCTGATCCTGAAATTCATAGGATTATGGAGAAAGAGAAGTTGAGACAGTTTAAAGGGATTGAATTGATTGCTTCTGAGAATTTTGTGTGCAGGGCTGTCATGGAAGCACTTGGTAGTCATTTGACTAACAAGTATTCCGAGGGGATGCCGGGTGCTAAATACTATACTGGTAATCAGTACATTGATCAGCTTGAGTTTCTTTGTTGTGAACGTGCGTTGAATGCTTTTGATCTTGATTCGAATAATTGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCTGGTGATAGGATTATGGGTTTGGATTCGGCTTCTGGTGGACATCCGAGTCATGGTTATTATACTCATGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTTTCTTATAAGGTGAATCCTTTGACTGGTTACATTGATTATGATAAGCTTGAGGAGAAAGTGGTGGATTATAGACCTAAGATACTTATCTGTGGTGGTAGTTCTTATCCTAGAGAATGGGATTATGCTAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTATTTTGATGTGTGACATGGCTCATATTAGTGGTCTTGTTGCGGCTAAGGAAGTTGCTAGTCCATTTGAATACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTTAGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAGAGGGCCAAAACCAAGGAGGCAAGGCTTTGTTCTTAATCACGGAGACGAAAGTACTTATGATTTTGAGGAGAAGATAAACTTTGCTTTATATCCATCATTGCAAGGAGGTCCCCACAATAATCACATTGCTGCTCTTGCTATAGCTTTGAAACAAGTTGCAACTCCAGAGTATAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCATTTGCATTGTTGAGACGAAAATGCAGATTGGTAACTGATGGGACTGACAATCATCTTTTGCTCTGGGACATAACTGCACTTGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCATGTCACATCACTCTCAATAAGTGTGCCATTTATGGTTCTATTTCTTCTGGAGGAGTGAGAATTGGCACTCCAGCAATGACATCAAGGGGCTGTGTAGAGGAAGATTTTGAGACCATGGCTGATTTTCTTTTCAGGGCAGCTCAGATTACCAGCATTATACAGAGGGAACATGGTAAATCATGCAAAGATTTTATCAAGGGTCTTCAGAATAATAAAGATATTTTTGACCTCAGAAATCGGGTCGAGGCATTTGGTTCCCAGTTTGAAATGCCAGGATTCACTTATTGA	1764	0.3946	MDSQAGLSLGLNASMQSPAGSSTASHSDDPLSFNFLNSKSNSKSTTTTTTNSHSLSWCFVPEKQPENNVVVVVKKREHEEDEDGVVDGEEQGETINFMGRTVSVKRKIEECQQSFPVKRVAVDSKAVSWGNQPLSVADPEIHRIMEKEKLRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQLEFLCCERALNAFDLDSNNWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDSASGGHPSHGYYTHGGKKVSAASIFFETFSYKVNPLTGYIDYDKLEEKVVDYRPKILICGGSSYPREWDYARFRKIADKCGAILMCDMAHISGLVAAKEVASPFEYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRRQGFVLNHGDESTYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALAFALLRRKCRLVTDGTDNHLLLWDITALGLIDRNYEKVCEACHITLNKCAIYGSISSGGVRIGTPAMTSRGCVEEDFETMADFLFRAAQITSIIQREHGKSCKDFIKGLQNNKDIFDLRNRVEAFGSQFEMPGFTY	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02262	587	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	125	586	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Trre5g02262	587	SUPERFAMILY	PLP-dependent transferases	129	585	IPR015424	-
	Trre5g02262	587	MobiDBLite	consensus disorder prediction	1	27	-	-
	Trre5g02262	587	Hamap	Serine hydroxymethyltransferase [glyA].	133	584	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Trre5g02262	587	FunFam	Serine hydroxymethyltransferase	163	381	-	-
	Trre5g02262	587	Gene3D	-	163	442	IPR015421	GO:0003824
	Trre5g02262	587	CDD	SHMT	138	542	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Trre5g02262	587	Pfam	Serine hydroxymethyltransferase	135	534	IPR039429	-
	Trre5g02262	587	ProSitePatterns	Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.	358	374	IPR019798	GO:0030170
	Trre5g02262	587	Gene3D	Aspartate Aminotransferase, domain 1	138	583	IPR015422	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02262	Trre-Chr5	17129429	17134586	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02262	K00600		-	gmx:100776419	887.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g02262	5	17129429	17134586	Trre5g02262	5	17129429	17134586	ECH