Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02260 ATGGCCGCGTCTCTCTTGAATCAATCATCTCTATTTGGCTGTTGTTCATGTTCTTCTAAATCTTCACAACCACAACCCAAATTCATACGTTTTCCATCTCGCCCCTTTCACGCTTCCAACACTATCTTAGGGTTTCCAACCCCCTTTCCCTCTATTACTCCACTCTTTGCTTCAACTACAAATAATGAAACAGAGGAGACTAAGAATGGTGAAGATAAAAAACCTTTACCTAGCTTAGTGGTCCTTATTGAAGCATACAAGAAGGCCTTTCTTAACGGCAATGAAACGACTACATCACAGATTGAAGAAAAAATACAATCATTGGCAAATAAAAAGAATAAATTGACACAGAAAGTATCTAGTCTGTCGGCAGATAAAGTTTCTGGAAAGGTGCAATATCTTCGCTTACAAGCGGATTTTGATAACTTTAGGAAAAGATGTGAGAAAGAAAAAATTAGCATCCAATCGGATGCCCAACAAGAATTTGTTAAGAAACTTTTGTTGATGGTGGACAGTTTCGAGAGAGTCAAACAACAGATTGAAGCAGCAACGGAGAAAGAGAAGAAGATTGATGCAAGCTATCAAAGTATTTACAAGCAATTTGTTGAGACTTTGAGGAGCCATAATGTTTCTGTGGTACCAACCGTGGGCAAGCCTTTTAATCCCTTGCTACATGAAGCCGTTGCACGTGAGGAGTCTGAAGTGTTCAAAGAAGGGATTATAATTAAAGAATCCCGACGAGGTTTCATGCTGAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAGAAATCTTCAGCGGCACCTGCCAAGTCCTTGGAGCAGCCTTCAACAGCTGCTAGAATTGATGAAAGATAA 879 0.4016 MAASLLNQSSLFGCCSCSSKSSQPQPKFIRFPSRPFHASNTILGFPTPFPSITPLFASTTNNETEETKNGEDKKPLPSLVVLIEAYKKAFLNGNETTTSQIEEKIQSLANKKNKLTQKVSSLSADKVSGKVQYLRLQADFDNFRKRCEKEKISIQSDAQQEFVKKLLLMVDSFERVKQQIEAATEKEKKIDASYQSIYKQFVETLRSHNVSVVPTVGKPFNPLLHEAVAREESEVFKEGIIIKESRRGFMLKDKVVRPALVKVSLGPGNKKSSAAPAKSLEQPSTAARIDER 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02260 292 PANTHER GRPE PROTEIN 63 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 PRINTS GrpE protein signature 217 232 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 PRINTS GrpE protein signature 134 150 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 PRINTS GrpE protein signature 162 177 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 PRINTS GrpE protein signature 244 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 113 208 IPR013805 -
Trre5g02260 292 Gene3D Head domain of nucleotide exchange factor GrpE 209 264 IPR009012 GO:0006457
Trre5g02260 292 MobiDBLite consensus disorder prediction 264 292 - -
Trre5g02260 292 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 211 265 IPR009012 GO:0006457
Trre5g02260 292 Pfam GrpE 102 264 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 Gene3D - 92 206 IPR013805 -
Trre5g02260 292 FunFam Protein GrpE 209 264 - -
Trre5g02260 292 Coils Coil 98 125 - -
Trre5g02260 292 ProSitePatterns grpE protein signature. 220 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 CDD GrpE 130 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre5g02260 292 Hamap Protein GrpE [grpE]. 60 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02260 Trre-Chr5 17115299 17118145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02260 K03687 - gmx:100809893 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02260 5 17115299 17118145 Trre5g02260 5 17115299 17118145 ECH