Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02256 ATGGAAAACGCCGACGTTTTCTTAGGTTTACACGACTTCCTTGAGCGCATGCGCCAACCCGCTGCCGCCGATTTCGTCAAAGCAATCAAAAGTTTCATAGTTTCGTTTTCAAATAATGGTCCCGATTCTGATAGAGACAGTGCCGCCGTTCAAGACTTCCTTGCTAATATTGCCGGTGAAGGTCTTGAGAAGTATGTTATGACGAAGTTGTTTTCCCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCAGAGAAGATGTCTTTGATTCAACAGTTTATCCGACCAGAAAATTTGGACATCAAGCCAGCATTTCAGAACGAAACATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATTAACATGTACAAGGCACCCAGAGACAAACTTATTTGTATCCTAAACTGTTGCAAGGTTATTGGCAACTTGCTGCTAAATGCTTCTCTTGCTTCCAAAGATAATCCTCCGGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTTACCTTAAAGGCAAATCCTCCCCAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGTCAATCTCGTTTGGTTGGGGAAGCATCATATTATTTTACAAATATGCTTTCTGCCGAATCCTTCATCTCAAACATTGATGCAAAAGCCATTTCGATGGATGAAACCGAGTTTGAGAGAAACATGGAATTTGCCCGTGCTCTTCTTTCAGGACTTTCAGTTGATACGCAAGATCCCAATTCACCTTATCAAAATCATGGACAGCATCCAAGAGCAGACAAAAATAAAACTTCGAATGACAATAAGGACACTGCGTTACGAACTTCGTCATCCGCTGCAAAATTAGAAAGTAAGAAAGTGTCTTTTGCAGATGAGTTATCGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATAATAAAAGAGGATAAACTGAATGATGTTTTCAGGGAGTTTCCATATTTATTTGCTAGTGTAGGTGATCTAACAGTAGGTGATGTCGAAGACCTGCTAAATAATTACAAACAATTAGTTTTCAAGTATGTGTCTCTTTCCAAAGGGTTAGGTGTCTCTTCTACATCTCACCTTTCATCCAATCCACAAAATAATGCTCAGCAAGACCCTGCTGAAACCCTTTCCAAAGGGTTAGGCGTCTTGGCTTCATCTCATCTTCCATCCAATCCTCAAAATAATGCTCAGAACCATGATGAAACCACAATAAATTCTTCAAACGGCGGACCTGTAGCTTCCATTGACAAACCAGAAAAATCTATGGACACATCTGATGATAACTCAGATCCTGAGGAGAAAAAAAGTGATTCAAGTTTGCTACAAGATGAGGCAGTTGCATCAGAGGGTGTTGCTCCATCTTAA 1413 0.4013 MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNGPDSDRDSAAVQDFLANIAGEGLEKYVMTKLFSRVFASLPDDVKLDDQLSEKMSLIQQFIRPENLDIKPAFQNETSWLLAQKELQKINMYKAPRDKLICILNCCKVIGNLLLNASLASKDNPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESFISNIDAKAISMDETEFERNMEFARALLSGLSVDTQDPNSPYQNHGQHPRADKNKTSNDNKDTALRTSSSAAKLESKKVSFADELSITKVPSLSDLENKGASMIIKEDKLNDVFREFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGVSSTSHLSSNPQNNAQQDPAETLSKGLGVLASSHLPSNPQNNAQNHDETTINSSNGGPVASIDKPEKSMDTSDDNSDPEEKKSDSSLLQDEAVASEGVAPS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02256 470 SMART vps9_2 115 234 IPR003123 -
Trre5g02256 470 MobiDBLite consensus disorder prediction 435 456 - -
Trre5g02256 470 FunFam Vacuolar protein sorting-associated protein 9A 79 245 - -
Trre5g02256 470 Gene3D - 17 60 - -
Trre5g02256 470 Pfam Vacuolar sorting protein 9 (VPS9) domain 118 221 IPR003123 -
Trre5g02256 470 ProSiteProfiles VPS9 domain profile. 82 226 IPR003123 -
Trre5g02256 470 Gene3D VPS9 domain 79 245 IPR037191 -
Trre5g02256 470 MobiDBLite consensus disorder prediction 400 428 - -
Trre5g02256 470 MobiDBLite consensus disorder prediction 399 470 - -
Trre5g02256 470 MobiDBLite consensus disorder prediction 249 286 - -
Trre5g02256 470 PANTHER RAB GDP/GTP EXCHANGE FACTOR 6 361 IPR045046 GO:0005085|GO:0016192
Trre5g02256 470 SUPERFAMILY VPS9 domain 11 237 IPR037191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02256 Trre-Chr5 17080671 17084768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02256 K20131 - gmx:100810958 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02256 5 17080671 17084768 Trre5g02256 5 17080671 17084768 ECH