LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02231	ATGCATCCTTTCTGCTGTGTCTCCGCTATTTCCGACCAAGCTTCACCGGTCAAACCCTCGCCGTCTCTTTTCCCTGACTTCTCTATGCCTCCTCCACCACCACCTCCTGCGGTTGCTGTTAGATCCGATTCGGCTATGATTCATAGTCACAGCCACAGTACCGGTAGTCAGCGGGAGTTACCGTTGCCGTTGCCGGCGGTGGTTGTTGATGTGAAGATCAACGACCTCGTCGGAAATGGAATCTCCGGTATACTTTATAAGTGGGTGAATTACGGTAAAGGATGGAGACCTCGTTGGTTTGTTCTTCAAGATGGTGTTCTCTCTTACTACAAGATTCATGGACCTGATAAAATCATCGTTAACCACGAAACTGAAAAAGGTTCCAAAGTAATCGGTGATGAATCTATTCGAAGGATCAATCGCAATCGTAAATCTTATCCCAATCAACACCGTCGAAAGCCTTTCGGTGAAATCCATCTCAAGGTTTCAACGATTCGGGAGAGTAAATCAGATGATAAGAGATTTTCAGTATTTACTGGAATGAAGAGACTTCACTTAAGAGCAGAGTCGCGTGAAGATCGTGTGGCTTGGGTGGAAGCTTTGCAAGCAGTGAAAGATATGTTTCCTAGAATTTCCAACAGTGAATTGATGGCTCCGGTGGACAACGTAACAATTTCAACTGATAAACTACGAAATCGGCTTCTGGAAGAAGGTGTGAGTGAATCAGCTATTCAAGATAGTGAACAAATTATGAAAACTGAGTTTGCAGCATTACAGAATCAACTAGTTTTGCTTAAGCAGAAACACTCCATTCTAATTGATACGTTACGCCACTTAGAGACAGACAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATCAAGAAGATTGCTATGGATTAACACAGGAAACATTTAGTGGTAGTGCAAGTGAATCTGAGGATGATAATGAGAGAAATGATGCTGCAGAAGAAGAAACAGATGAGGATGACAATGTCTTTTTTGATACCCGTGATATTCTATCATCAAGTTCTTTTAAAAGTAACGGGTCTGATTATAGAGTATCATCTTTTTCTTCTGATAATGATGCATTTGAATCAGAGGAAGATGTAGATCCTTCAAATAGATATATTGGAATCAACCACCCTTTTGTTAAGCGGCGAAAGAAATTGCCAGACCCTGTAGAGAAAGAGAAAGGTGTCAGTCTTTGGTCAATGATCAAGGATAATATAGGAAAAGATCTAACAAAAGTTTGCCTTCCTGTTTACTTTAATGAGCCTCTCTCTTCCCTGCAAAAGTGTTTTGAAGAAATGGAGTATTCACATCTGCTGGACCAAGCATATGAATGGGGAAAAAGGGGTGATAGCCTCATGAGGATTCTCTATGTCGCTGCTTTTGCTGTATCTGCCTATGCTTCAACCGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAAGCTCATTATCCAGATAAAGGCCTTCGCTTTTTTTCAGAGAAGGTCAGCCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTCGGGGGATAGCAACTTAAAAAGCAAATTCTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTACTTTGACTTTGGAATTTGATGATGGGGAGGTTTTTCAGTGGAGCAAGGTTACAACATCAATATACAATCTCATATTGGGAAAGCTTTACTGTGATCACTATGGTACAATGCGTATAGAGGGAAATCAAGAGTATTCTTGTAAGCTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCATCAGGTCCATGGTATAGTCCAAGATAGGAACGGAAAAACAGTATCAACCTTGTTTGGAAAATGGGATGAAAGCATGCACTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCATGAATCTTTGTCAGAGGCCCATCTACTCTGGAAGCGAAGCAAGCCTCCCATCTTTCCCACCAGATATAACTTCACTCGCTTTGCCATCACGTTAAATGAACTTACCCCTGGATTGAAGGAGAAATTGCCCCCTACAGATTCCAGGTTAAGACCAGACCAACGATATTTAGAAAATGGGGAGTATGAGATGGCAAACTCAGAAAAGTTACGGCTAGAGCAGCGGCAACGACAGGCCCGGAAGATGCAAGAGAGCGGCTGGAAACCGCGATGGTTTGCTAAGGATAAAGCAAGTGGGTCATACCGCTATATGGGAGGCTACTGGGAGGCTCGAGAAAAACGAAAATGGGATTCATGTCCTGACATCTTTGGCCAAATTCCTCCAGATCATATATCTGAAGAAATCCAGATTACATCTTAA	2373	0.421	MHPFCCVSAISDQASPVKPSPSLFPDFSMPPPPPPPAVAVRSDSAMIHSHSHSTGSQRELPLPLPAVVVDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNHETEKGSKVIGDESIRRINRNRKSYPNQHRRKPFGEIHLKVSTIRESKSDDKRFSVFTGMKRLHLRAESREDRVAWVEALQAVKDMFPRISNSELMAPVDNVTISTDKLRNRLLEEGVSESAIQDSEQIMKTEFAALQNQLVLLKQKHSILIDTLRHLETDKVDLENTVVDESQRQWNDQEDCYGLTQETFSGSASESEDDNERNDAAEEETDEDDNVFFDTRDILSSSSFKSNGSDYRVSSFSSDNDAFESEEDVDPSNRYIGINHPFVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSHLLDQAYEWGKRGDSLMRILYVAAFAVSAYASTEGRICKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFSGDSNLKSKFWGRSIQLDPVGTLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIEGNQEYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSEAHLLWKRSKPPIFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGSYRYMGGYWEAREKRKWDSCPDIFGQIPPDHISEEIQITS	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02231	790	Coils	Coil	713	733	-	-
	Trre5g02231	790	CDD	PH_ORP_plant	81	213	-	-
	Trre5g02231	790	Gene3D	-	705	770	-	-
	Trre5g02231	790	MobiDBLite	consensus disorder prediction	353	368	-	-
	Trre5g02231	790	MobiDBLite	consensus disorder prediction	323	339	-	-
	Trre5g02231	790	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	80	762	IPR000648	GO:0008289
	Trre5g02231	790	SUPERFAMILY	PH domain-like	81	206	-	-
	Trre5g02231	790	SUPERFAMILY	Oxysterol-binding protein-like	403	786	IPR037239	-
	Trre5g02231	790	Pfam	Pleckstrin homology domain	86	202	-	-
	Trre5g02231	790	Coils	Coil	276	296	-	-
	Trre5g02231	790	SMART	PH_update	79	208	IPR001849	-
	Trre5g02231	790	Pfam	Oxysterol-binding protein	408	763	IPR000648	GO:0008289
	Trre5g02231	790	ProSiteProfiles	PH domain profile.	78	206	IPR001849	-
	Trre5g02231	790	Gene3D	-	494	669	-	-
	Trre5g02231	790	FunFam	oxysterol-binding protein-related protein 1D isoform X1	494	666	-	-
	Trre5g02231	790	FunFam	Oxysterol-binding protein-related protein 2A	705	776	-	-
	Trre5g02231	790	Gene3D	-	79	208	IPR011993	-
	Trre5g02231	790	MobiDBLite	consensus disorder prediction	311	340	-	-
	Trre5g02231	790	MobiDBLite	consensus disorder prediction	353	376	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02231	Trre-Chr5	16813036	16818790	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02231	K20456		-	gmx:100137077	1351.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g02231	5	16813036	16818790	Trre5g02231	5	16813036	16818790	ECH